All written reports are pasted and it compiles

2025-02-04 18:11:58 +01:00
parent 893fabe70b
commit d1460c5d1d
49 changed files with 15168 additions and 6329 deletions
--- a/setup.org
+++ b/setup.org
@@ -1,71 +1,11 @@
 #+TITLE: Setup file
 #+PROPERTY: header-args:latex :tangle config.tex

-* Babel
-#+begin_src latex
-\usepackage[french,english]{babel}
-#+end_src
-
-* Figures
-#+begin_src latex
-\usepackage{graphicx}
-\graphicspath{{figs/}}
-#+end_src
-
-* Captions
-#+begin_src latex
-\usepackage{subcaption}
-\captionsetup{subrefformat=parens}
-#+end_src
-
-* Glossary
-#+begin_src latex
-\usepackage[      %
-    acronym,      % Separate acronyms and glossary
-    toc,          % appear in ToC
-    automake,     % auto-use the makeglossaries command (requires shell-escape)
-    nonumberlist, % don't back reference pages
-    nogroupskip,  % don't group by letter
-    nopostdot     % don't add a dot at the end of each element
-]{glossaries}
-
-\usepackage[stylemods=longextra]{glossaries-extra}
-
-\setabbreviationstyle[acronym]{long-short}
-\setglossarystyle{long-name-desc}
-#+end_src
-
-#+begin_src latex :tangle config_extra.tex
-\makeindex
-\makeglossaries
-#+end_src
-
-* Lists
-Do not modify itemize/enumerate environments by default
-#+begin_src latex
-\usepackage[olditem,oldenum]{paralist}
-#+end_src
-
-* Spacing
-#+begin_src latex
-\RequirePackage{setspace}
-\onehalfspacing
-#+end_src
-
-* Tables
-#+begin_src latex
-\usepackage{booktabs}
-\usepackage{multirow}
-\usepackage{tabularx}
-#+end_src
-
-I reduce the size of tables so that longer tables can still fit into an A4 (reduce font and make sans serif).
-#+begin_src latex
-\usepackage{floatrow}
-\floatsetup[table]{font={footnotesize,sf},capposition=top}
-#+end_src
-
-* Units
+* Config
+:PROPERTIES:
+:header-args:latex: :tangle config.tex
+:END:
+** Units
 #+begin_src latex
 \usepackage[binary-units=true]{siunitx}

@@ -82,10 +22,11 @@ I reduce the size of tables so that longer tables can still fit into an A4 (redu
 \DeclareSIUnit\rms{rms}
 #+end_src

-* Mathematics
+** Mathematics
 #+begin_src latex
 \usepackage{amsmath}
 \usepackage{amsthm}
+\usepackage{bm}
 \usepackage{dsfont}
 #+end_src

@@ -98,25 +39,94 @@ Use these with the proper bracket in order to ensure that they scale automatical
 \renewcommand{\right}{\aftergroup\egroup\originalright}
 #+end_src

-* Geometry
+** Glossary
+#+begin_src latex
+\usepackage[      %
+    acronym,      % Separate acronyms and glossary
+    toc,          % appear in ToC
+    automake,     % auto-use the makeglossaries command (requires shell-escape)
+    nonumberlist, % don't back reference pages
+    nogroupskip,  % don't group by letter
+    nopostdot     % don't add a dot at the end of each element
+]{glossaries}
+
+\usepackage[stylemods=longextra]{glossaries-extra}
+
+\setabbreviationstyle[acronym]{long-short}
+\setglossarystyle{long-name-desc}
+#+end_src
+
+* Config Extra
+:PROPERTIES:
+:header-args:latex: :tangle config_extra.tex
+:END:
+** Babel
+#+begin_src latex
+\usepackage[french,english]{babel}
+#+end_src
+
+** Figures
+#+begin_src latex
+\usepackage{graphicx}
+\graphicspath{{figs/}}
+#+end_src
+
+** Captions
+#+begin_src latex
+\usepackage{caption}
+\usepackage{subcaption}
+\captionsetup{subrefformat=parens}
+
+\captionsetup[figure]{labelfont=bf}
+\captionsetup[subfigure]{labelfont=bf}
+\captionsetup[listing]{labelfont=bf}
+\captionsetup[table]{labelfont=bf}
+#+end_src
+
+** Lists
+Do not modify itemize/enumerate environments by default
+#+begin_src latex
+\usepackage[olditem,oldenum]{paralist}
+#+end_src
+
+** Spacing
+#+begin_src latex
+\RequirePackage{setspace}
+\onehalfspacing
+#+end_src
+
+** Tables
+#+begin_src latex
+\usepackage{booktabs}
+\usepackage{multirow}
+\usepackage{tabularx}
+#+end_src
+
+I reduce the size of tables so that longer tables can still fit into an A4 (reduce font and make sans serif).
+#+begin_src latex
+\usepackage{floatrow}
+\floatsetup[table]{font={footnotesize,sf},capposition=top}
+#+end_src
+
+** Geometry

 # \usepackage[paperheight=24.41cm,paperwidth=17.21cm,bottom=3cm,left=1.4cm,right=2cm,heightrounded]{geometry}

-* Penalties
+** Penalties
 #+begin_src latex
 \clubpenalty         = 10000
 \widowpenalty        = 10000
 \displaywidowpenalty = 10000
 #+end_src

-* Headers
+** Headers
 #+begin_src latex
 \usepackage{scrlayer-scrpage}

 \pagestyle{scrheadings}
 #+end_src

-* Section/Figure format
+** Section/Figure format
 #+begin_src latex
 \renewcommand{\partformat}{\huge\partname~\thepart\autodot}
 \renewcommand{\raggedpart}{\flushleft}
@@ -143,8 +153,7 @@ The following commands make chapter numbers BrickRed.
 \makeatother
 #+end_src

-
-* Floating images configuration
+** Floating images configuration
 By default, if a figure consumes 60% of the page it will get its own float-page.
 To change that we have to adjust the value of the =floatpagefraction= derivative.
 #+begin_src latex
@@ -153,12 +162,14 @@ To change that we have to adjust the value of the =floatpagefraction= derivative

 See more information [[https://tex.stackexchange.com/questions/68516/avoid-that-figure-gets-its-own-page][here]].

-* Etoolbox package
+** Etoolbox package
 #+begin_src latex
 \usepackage{etoolbox}
+
+\pretocmd{\section}{\clearpage}{}{}
 #+end_src

-* Hyperref and Bookmarks
+** Hyperref and Bookmarks
 #+begin_src latex
 \usepackage[            %
    colorlinks=true,    %
@@ -167,6 +178,8 @@ See more information [[https://tex.stackexchange.com/questions/68516/avoid-that-
    urlcolor=BrickRed,  %
    unicode             %
    ]{hyperref}
+
+\usepackage{hypcap}
 #+end_src

 The bookmark package implements a new bookmark (outline) organisation for package hyperref.
@@ -178,7 +191,17 @@ This lets us change the "tree-navigation" associated with the generated pdf and
 \bookmarksetup{depth=2}
 #+end_src

-* Bibliography
+** Use pdf instead of png
+#+begin_src latex
+\makeatletter
+\preto\Gin@extensions{png,}
+\DeclareGraphicsRule{.png}{pdf}{.pdf}{\noexpand\Gin@base.pdf}
+\preto\Gin@extensions{gif,}
+\DeclareGraphicsRule{.gif}{png}{.png}{\noexpand\Gin@base.png}
+\makeatother
+#+end_src
+
+** Bibliography

 #+begin_src latex
 \usepackage{xpatch} % Recommanded for biblatex
@@ -236,7 +259,7 @@ Also reduce the font-size
 \renewcommand*{\bibfont}{\footnotesize}
 #+end_src

-* Table of Contents for each chapter
+** Table of Contents for each chapter
 Note that this is marked as deprecated for koma-script.
 #+begin_src latex
 \usepackage{minitoc}
@@ -247,39 +270,55 @@ Note that this is marked as deprecated for koma-script.
 % \usepackage[nottoc]{tocbibind}
 #+end_src

-* Fonts
+** TODO Fonts

 #+begin_src latex
 \ifxetexorluatex
-  \usepackage{unicode-math}
+  % \usepackage{unicode-math} % It seems I don't need that as I don't want to use unicode char
+  \usepackage{fontspec}
  \setmainfont{EB Garamond}
-  \setmathfont{Garamond Math}
+  % \setmathfont{Garamond Math}

-  % Load some missing symbols from another font.
-  \setmathfont{STIX Two Math}[%
-    range = {
-      \sharp,
-      \natural,
-      \flat,
-      \clubsuit,
-      \spadesuit,
-      \checkmark
-    }
-  ]
-  \setmonofont[Scale=MatchLowercase]{Source Code Pro}
+  % % Load some missing symbols from another font.
+  % \setmathfont{STIX Two Math}[%
+  % range = {
+  % \sharp,
+  % \natural,
+  % \flat,
+  % \clubsuit,
+  % \spadesuit,
+  % \checkmark
+  % }
+  %   ]
+  %   \setmonofont[Scale=MatchLowercase]{Source Code Pro}
 \else
-  \usepackage[lf]{ebgaramond} % https://tug.org/FontCatalogue/quattrocento/
+  % \usepackage[lf]{ebgaramond} % https://tug.org/FontCatalogue/quattrocento/
  \usepackage[oldstyle,scale=0.7]{sourcecodepro} % https://tug.org/FontCatalogue/sourcecodepro/
  \singlespacing
 \fi
 #+end_src

-* Colors
+** Colors
 #+begin_src latex
 \usepackage[usenames,dvipsnames]{xcolor}
+
+\definecolor{my-blue}{HTML}{6b7adb}
+\definecolor{my-pale-blue}{HTML}{e6e9f9}
+\definecolor{my-red}{HTML}{db6b6b}
+\definecolor{my-pale-red}{HTML}{f9e6e6}
+\definecolor{my-green}{HTML}{6bdbb6}
+\definecolor{my-pale-green}{HTML}{e6f9f3}
+\definecolor{my-yellow}{HTML}{dbd26b}
+\definecolor{my-pale-yellow}{HTML}{f9f7e6}
+\definecolor{my-orange}{HTML}{dba76b}
+\definecolor{my-pale-orange}{HTML}{f9f0e6}
+\definecolor{my-grey}{HTML}{a3a3a3}
+\definecolor{my-pale-grey}{HTML}{f0f0f0}
+\definecolor{my-turq}{HTML}{6bc7db}
+\definecolor{my-pale-turq}{HTML}{e6f6f9}
 #+end_src

-* CS Quotes
+** CS Quotes
 The [[https://ctan.org/pkg/csquotes][csquotes]] package offers context sensitive quotation facilities, improving the typesetting of inline quotes.

 #+begin_src latex
@@ -310,28 +349,28 @@ And then use quotes as:

 Note that org-ref links won't work here because the attr latex will be pasted as-is in the .tex file.

-* Setspace for controlling line spacing
+** Setspace for controlling line spacing

 #+begin_src latex
 \usepackage{setspace}
 \setstretch{1.25}
 #+end_src

-* Parskip
+** Parskip

 Fine tuning of spacing between paragraphs. See [[https://tex.stackexchange.com/questions/161254/smaller-parskip-than-half-for-koma-script][thread here]].
 #+begin_src latex
 \setparsizes{0em}{0.1\baselineskip plus .1\baselineskip}{1em plus 1fil}
 #+end_src

-* Possible Equation improvements
+** Possible Equation improvements

 Make the equation numbers follow the chapter, not the whole thesis.
 #+begin_src latex
 \numberwithin{equation}{chapter}
 #+end_src

-* Minted
+** Minted

 The minted package is used for highlighting source code.
 #+begin_src latex
@@ -349,14 +388,19 @@ And reduce the distance between a minted listing and its caption.
 \AtEndEnvironment{listing}{\vspace{-16pt}}
 #+end_src

-* Scrhack
+#+begin_src matlab
+\let\OldTexttt\texttt
+\renewcommand{\texttt}[1]{{\ttfamily\hl{\mbox{\,#1\,}}}}
+#+end_src
+
+** Scrhack

 This package fixes some incompatibility errors between KOMAScript and other packages (namely minted). It has to be loaded at the end.
 #+begin_src latex
 \usepackage{scrhack}
 #+end_src

-* Background cover page
+** Background cover page

 Add the cover image as background to the first page. Only do so when outputting a final version, because it significantly slows down the compilation times.
 #+begin_src latex :tangle no
@@ -371,3 +415,19 @@ Add the cover image as background to the first page. Only do so when outputting
  }%
 }
 #+end_src
+
+** Various
+#+begin_src latex
+\usepackage{float}
+\usepackage{enumitem}
+
+% highlight
+\usepackage{soul}
+\sethlcolor{my-pale-grey}
+#+end_src
+
+** Index and glossaries
+#+begin_src latex
+\makeindex
+\makeglossaries
+#+end_src