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Better LaTeX setup

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This commit is contained in:
Thomas Dehaeze
2025-02-04 23:10:59 +01:00
parent a8e88ce746
commit 7074b2bf04
5 changed files with 331 additions and 267 deletions
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106
config_extra.tex
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@@ -17,6 +17,9 @@
\RequirePackage{setspace}
\onehalfspacing
\usepackage{tocloft}
\setlength{\cftfignumwidth}{2.5em} % Adjust this value as needed
\usepackage{booktabs}
\usepackage{multirow}
\usepackage{tabularx}
@@ -28,50 +31,12 @@
\widowpenalty = 10000
\displaywidowpenalty = 10000
\usepackage{scrlayer-scrpage}
\pagestyle{scrheadings}
\renewcommand{\partformat}{\huge\partname~\thepart\autodot}
\renewcommand{\raggedpart}{\flushleft}
\setkomafont{part}{\normalfont\huge\scshape}
\setkomafont{sectioning}{\normalfont\scshape}
\setkomafont{descriptionlabel}{\normalfont\bfseries}
\setkomafont{caption}{\small}
\setkomafont{captionlabel}{\usekomafont{caption}}
\setcounter{secnumdepth}{\subsubsectionnumdepth}
\makeatletter
\renewcommand*{\chapterformat}{ \mbox{\chapappifchapterprefix{\nobreakspace}{\color{BrickRed}\fontsize{40}{45}\selectfont\thechapter}\autodot\enskip}}
% Section with color
% \renewcommand\@seccntformat[1]{\color{BrickRed} {\csname the#1\endcsname}\hspace{0.3em}}
\renewcommand\@seccntformat[1]{{\csname the#1\endcsname}\hspace{0.3em}}
\makeatother
\renewcommand{\floatpagefraction}{.8}%
\usepackage{etoolbox}
\pretocmd{\section}{\clearpage}{}{}
\usepackage[ %
colorlinks=true, %
citecolor=BrickRed, %
linkcolor=BrickRed, %
urlcolor=BrickRed, %
unicode %
]{hyperref}
\usepackage{hypcap}
\usepackage{bookmark}
\bookmarksetup{depth=2}
\makeatletter
\preto\Gin@extensions{png,}
\DeclareGraphicsRule{.png}{pdf}{.pdf}{\noexpand\Gin@base.pdf}
@@ -198,6 +163,9 @@
\AtEndEnvironment{listing}{\vspace{-16pt}}
\let\OldTexttt\texttt
\renewcommand{\texttt}[1]{{\ttfamily\hl{\mbox{\,#1\,}}}}
\usepackage{scrhack}
\usepackage{float}
@@ -207,5 +175,67 @@
\usepackage{soul}
\sethlcolor{my-pale-grey}
% \usepackage[headsepline]{scrlayer-scrpage}
% \pagestyle{scrheadings}
\usepackage[autooneside=false,headsepline]{scrlayer-scrpage}
% \pagestyle{scrheadings}
% \automark[section]{chapter}
% Clear default header styles
\clearpairofpagestyles
\automark[section]{chapter}
% Set the header content
\ihead{\headmark} % Chapter (or section on even pages) aligned to the left
\ohead{\pagemark} % Page number aligned to the right
% Enable the page style
\pagestyle{scrheadings}
\setkomafont{headsepline}{\color{black}} % Change color if desired
\ModifyLayer[addvoffset=\dp\strutbox]{headsepline} % Fine-tune position
% \automark{section}
% \renewhead*{headings}{
% \ifstr{\headmark}{}{}{%
% \headmark\hfill
% }
% }
\renewcommand{\partformat}{\huge\partname~\thepart\autodot}
\renewcommand{\raggedpart}{\flushleft}
\setkomafont{part}{\normalfont\huge\scshape}
\setkomafont{sectioning}{\normalfont\scshape}
\setkomafont{descriptionlabel}{\normalfont\bfseries}
\setkomafont{caption}{\small}
\setkomafont{captionlabel}{\usekomafont{caption}}
\setcounter{secnumdepth}{\subsubsectionnumdepth}
\makeatletter
\renewcommand*{\chapterformat}{ \mbox{\chapappifchapterprefix{\nobreakspace}{\color{BrickRed}\fontsize{40}{45}\selectfont\thechapter}\autodot\enskip}}
% Section with color
% \renewcommand\@seccntformat[1]{\color{BrickRed} {\csname the#1\endcsname}\hspace{0.3em}}
\renewcommand\@seccntformat[1]{{\csname the#1\endcsname}\hspace{0.3em}}
\makeatother
\usepackage[ %
colorlinks=true, %
citecolor=BrickRed, %
linkcolor=BrickRed, %
urlcolor=BrickRed, %
unicode %
]{hyperref}
\usepackage{hypcap}
\usepackage{bookmark}
\bookmarksetup{depth=2}
\makeindex
\makeglossaries

40
phd-thesis.org
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@@ -55,7 +55,6 @@
("\\paragraph{%s}" . "\\paragraph*{%s}")
))
;; Remove automatic org heading labels
(defun my-latex-filter-removeOrgAutoLabels (text backend info)
"Org-mode automatically generates labels for headings despite explicit use of `#+LABEL`. This filter forcibly removes all automatically generated org-labels in headings."
@@ -86,11 +85,6 @@
org-ref-acronyms-before-parsing))
#+END_SRC
* Useful snippets :noexport:
- acronyms acrshort:nass acrshort:mimo acrshort:lti [[acrfull:siso][Single-Input Single-Output (SISO)]]
- glossary terms gls:ka, gls:phi.
* Glossary and Acronyms - Tables :ignore:
#+name: glossary
@@ -173,7 +167,6 @@
:UNNUMBERED: notoc
:END:
\gls{phi}
* Résumé
:PROPERTIES:
@@ -198,7 +191,6 @@
* Introduction
# [[file:/home/thomas/Cloud/work-projects/ID31-NASS/phd-thesis-chapters/A0-nass-introduction/nass-introduction.org][NASS - Introduction]]
* Conceptual Design Development
\minitoc
**** Abstract
@@ -388,8 +380,6 @@ For further analysis, 9 "configurations" of the uniaxial NASS model of Figure re
#+end_subfigure
#+end_figure
**** Identification of all combination of stiffnesses / masses :noexport:
*** Disturbance Identification
:PROPERTIES:
:HEADER-ARGS:matlab+: :tangle matlab/uniaxial_3_disturbances.m
@@ -734,8 +724,6 @@ Therefore, it is expected that the micro-station dynamics might impact the achie
#+end_subfigure
#+end_figure
**** Active Damping Controller Optimization and Damped plants :noexport:
**** Achievable Damping and Damped Plants
<<ssec:uniaxial_active_damping_achievable_damping>>
@@ -1627,8 +1615,6 @@ Physically, the negative stiffness term $-m\Omega^2$ induced by centrifugal forc
#+end_subfigure
#+end_figure
**** Identify Generic Dynamics :noexport:
**** System Dynamics: Effect of rotation
The system dynamics from actuator forces $[F_u, F_v]$ to the relative motion $[d_u, d_v]$ is identified for several rotating velocities.
Looking at the transfer function matrix $\mathbf{G}_d$ in equation eqref:eq:rotating_Gd_w0_xi_k, one can see that the two diagonal (direct) terms are equal and that the two off-diagonal (coupling) terms are opposite.
@@ -1953,8 +1939,6 @@ Thus, if the added /parallel stiffness/ $k_p$ is higher than the /negative stiff
\boxed{\alpha > \frac{\Omega^2}{{\omega_0}^2} \quad \Leftrightarrow \quad k_p > m \Omega^2}
\end{equation}
**** Identify plant with parallel stiffnesses :noexport:
**** Effect of parallel stiffness on the IFF plant
The IFF plant (transfer function from $[F_u, F_v]$ to $[f_u, f_v]$) is identified without parallel stiffness $k_p = 0$, with a small parallel stiffness $k_p < m \Omega^2$ and with a large parallel stiffness $k_p > m \Omega^2$.
Bode plots of the obtained dynamics are shown in Figure ref:fig:rotating_iff_effect_kp.
@@ -2129,8 +2113,6 @@ These two proposed IFF modifications and relative damping control are compared i
For the following comparisons, the cut-off frequency for the added HPF is set to $\omega_i = 0.1 \omega_0$ and the stiffness of the parallel springs is set to $k_p = 5 m \Omega^2$ (corresponding to $\alpha = 0.05$).
These values are chosen one the basis of previous discussions about optimal parameters.
**** Identify plants :noexport:
**** Root Locus
Figure ref:fig:rotating_comp_techniques_root_locus shows the Root Locus plots for the two proposed IFF modifications and the relative damping control.
While the two pairs of complex conjugate open-loop poles are identical for both IFF modifications, the transmission zeros are not.
@@ -2203,8 +2185,6 @@ The previous analysis is now applied to a model representing a rotating nano-hex
Three nano-hexapod stiffnesses are tested as for the uniaxial model: $k_n = \SI{0.01}{\N\per\mu\m}$, $k_n = \SI{1}{\N\per\mu\m}$ and $k_n = \SI{100}{\N\per\mu\m}$.
Only the maximum rotating velocity is here considered ($\Omega = \SI{60}{rpm}$) with the light sample ($m_s = \SI{1}{kg}$) because this is the worst identified case scenario in terms of gyroscopic effects.
**** Identify NASS dynamics :noexport:
**** Nano-Active-Stabilization-System - Plant Dynamics
For the NASS, the maximum rotating velocity is $\Omega = \SI[parse-numbers=false]{2\pi}{\radian\per\s}$ for a suspended mass on top of the nano-hexapod's actuators equal to $m_n + m_s = \SI{16}{\kilo\gram}$.
The parallel stiffness corresponding to the centrifugal forces is $m \Omega^2 \approx \SI{0.6}{\newton\per\mm}$.
@@ -2524,6 +2504,7 @@ Conclusions are similar than those of the uniaxial (non-rotating) model:
:PROPERTIES:
:UNNUMBERED: t
:END:
<<sec:rotating_conclusion>>
In this study, the gyroscopic effects induced by the spindle's rotation have been studied using a simplified model (Section ref:sec:rotating_system_description).
Decentralized acrlong:iff with pure integrators was shown to be unstable when applied to rotating platforms (Section ref:sec:rotating_iff_pure_int).
@@ -3154,6 +3135,9 @@ This can be seen in Figure ref:fig:modal_comp_acc_frf_modal_3 that shows the fre
#+end_figure
*** Conclusion
:PROPERTIES:
:UNNUMBERED: t
:END:
<<sec:modal_conclusion>>
In this study, a modal analysis of the micro-station was performed.
@@ -4752,6 +4736,9 @@ Using this simple test bench, it can be concluded that the /super element/ model
#+end_figure
*** Conclusion
:PROPERTIES:
:UNNUMBERED: t
:END:
<<sec:test_apa_conclusion>>
In this study, the amplified piezoelectric actuators "APA300ML" have been characterized to ensure that they fulfill all the requirements determined during the detailed design phase.
@@ -6360,6 +6347,11 @@ Therefore, the model effectively represents the system coupling for different pa
[[file:figs/test_nhexa_comp_simscape_de_all_high_mass.png]]
*** Conclusion
:PROPERTIES:
:UNNUMBERED: t
:END:
<<sec:test_nhexa_conclusion>>
The goal of this test bench was to obtain an accurate model of the nano-hexapod that could then be included on top of the micro-station model.
The adopted strategy was to identify the nano-hexapod dynamics under conditions in which all factors that could have affected the nano-hexapod dynamics were considered.
This was achieved by developing a suspended table with low frequency suspension modes that can be accurately modeled (Section ref:sec:test_nhexa_table).
@@ -7630,6 +7622,7 @@ Moreover, the systematic approach to system development and validation, along wi
#+begin_export latex
\begin{refsection}[ref.bib]
\renewcommand{\clearpage}{} % Désactive \clearpage temporairement
% List all papers even if not cited
\nocite{*}
% Sort by year
@@ -7642,10 +7635,11 @@ Moreover, the systematic approach to system development and validation, along wi
#+end_export
* Glossary :ignore:
[[printglossaries:]]
#+latex: \printglossary[type=\acronymtype]
#+latex: \printglossary[type=\glossarytype]
#+latex: \printglossary
# #+latex: \printglossary[type=\acronymtype]
# #+latex: \printglossary[type=\glossarytype]
# #+latex: \printglossary
* Footnotes

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phd-thesis.pdf
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300
phd-thesis.tex
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152
setup.org
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@@ -95,6 +95,12 @@ Do not modify itemize/enumerate environments by default
\onehalfspacing
#+end_src
** List of figures
#+begin_src latex
\usepackage{tocloft}
\setlength{\cftfignumwidth}{2.5em} % Adjust this value as needed
#+end_src
** Tables
#+begin_src latex
\usepackage{booktabs}
@@ -119,40 +125,6 @@ I reduce the size of tables so that longer tables can still fit into an A4 (redu
\displaywidowpenalty = 10000
#+end_src
** Headers
#+begin_src latex
\usepackage{scrlayer-scrpage}
\pagestyle{scrheadings}
#+end_src
** Section/Figure format
#+begin_src latex
\renewcommand{\partformat}{\huge\partname~\thepart\autodot}
\renewcommand{\raggedpart}{\flushleft}
\setkomafont{part}{\normalfont\huge\scshape}
\setkomafont{sectioning}{\normalfont\scshape}
\setkomafont{descriptionlabel}{\normalfont\bfseries}
\setkomafont{caption}{\small}
\setkomafont{captionlabel}{\usekomafont{caption}}
\setcounter{secnumdepth}{\subsubsectionnumdepth}
#+end_src
Improve chapter font colors and font size.
The following commands make chapter numbers BrickRed.
#+begin_src latex
\makeatletter
\renewcommand*{\chapterformat}{ \mbox{\chapappifchapterprefix{\nobreakspace}{\color{BrickRed}\fontsize{40}{45}\selectfont\thechapter}\autodot\enskip}}
% Section with color
% \renewcommand\@seccntformat[1]{\color{BrickRed} {\csname the#1\endcsname}\hspace{0.3em}}
\renewcommand\@seccntformat[1]{{\csname the#1\endcsname}\hspace{0.3em}}
\makeatother
#+end_src
** Floating images configuration
By default, if a figure consumes 60% of the page it will get its own float-page.
To change that we have to adjust the value of the =floatpagefraction= derivative.
@@ -169,28 +141,6 @@ See more information [[https://tex.stackexchange.com/questions/68516/avoid-that-
\pretocmd{\section}{\clearpage}{}{}
#+end_src
** Hyperref and Bookmarks
#+begin_src latex
\usepackage[ %
colorlinks=true, %
citecolor=BrickRed, %
linkcolor=BrickRed, %
urlcolor=BrickRed, %
unicode %
]{hyperref}
\usepackage{hypcap}
#+end_src
The bookmark package implements a new bookmark (outline) organisation for package hyperref.
This lets us change the "tree-navigation" associated with the generated pdf and constrain the menu only to H:2.
#+begin_src latex
\usepackage{bookmark}
\bookmarksetup{depth=2}
#+end_src
** Use pdf instead of png
#+begin_src latex
\makeatletter
@@ -388,7 +338,7 @@ And reduce the distance between a minted listing and its caption.
\AtEndEnvironment{listing}{\vspace{-16pt}}
#+end_src
#+begin_src matlab
#+begin_src latex
\let\OldTexttt\texttt
\renewcommand{\texttt}[1]{{\ttfamily\hl{\mbox{\,#1\,}}}}
#+end_src
@@ -426,6 +376,94 @@ Add the cover image as background to the first page. Only do so when outputting
\sethlcolor{my-pale-grey}
#+end_src
** Headers
#+begin_src latex
% \usepackage[headsepline]{scrlayer-scrpage}
% \pagestyle{scrheadings}
#+end_src
Config to have the chapter name until there is a section, and then displays the sections (from the doc)
#+begin_src latex
\usepackage[autooneside=false,headsepline]{scrlayer-scrpage}
% \pagestyle{scrheadings}
% \automark[section]{chapter}
#+end_src
#+begin_src latex
% Clear default header styles
\clearpairofpagestyles
\automark[section]{chapter}
% Set the header content
\ihead{\headmark} % Chapter (or section on even pages) aligned to the left
\ohead{\pagemark} % Page number aligned to the right
% Enable the page style
\pagestyle{scrheadings}
\setkomafont{headsepline}{\color{black}} % Change color if desired
\ModifyLayer[addvoffset=\dp\strutbox]{headsepline} % Fine-tune position
#+end_src
Kind of working solution:
#+begin_src latex
% \automark{section}
% \renewhead*{headings}{
% \ifstr{\headmark}{}{}{%
% \headmark\hfill
% }
% }
#+end_src
** Section/Figure format
#+begin_src latex
\renewcommand{\partformat}{\huge\partname~\thepart\autodot}
\renewcommand{\raggedpart}{\flushleft}
\setkomafont{part}{\normalfont\huge\scshape}
\setkomafont{sectioning}{\normalfont\scshape}
\setkomafont{descriptionlabel}{\normalfont\bfseries}
\setkomafont{caption}{\small}
\setkomafont{captionlabel}{\usekomafont{caption}}
\setcounter{secnumdepth}{\subsubsectionnumdepth}
#+end_src
Improve chapter font colors and font size.
The following commands make chapter numbers BrickRed.
#+begin_src latex
\makeatletter
\renewcommand*{\chapterformat}{ \mbox{\chapappifchapterprefix{\nobreakspace}{\color{BrickRed}\fontsize{40}{45}\selectfont\thechapter}\autodot\enskip}}
% Section with color
% \renewcommand\@seccntformat[1]{\color{BrickRed} {\csname the#1\endcsname}\hspace{0.3em}}
\renewcommand\@seccntformat[1]{{\csname the#1\endcsname}\hspace{0.3em}}
\makeatother
#+end_src
** Hyperref and Bookmarks
#+begin_src latex
\usepackage[ %
colorlinks=true, %
citecolor=BrickRed, %
linkcolor=BrickRed, %
urlcolor=BrickRed, %
unicode %
]{hyperref}
\usepackage{hypcap}
#+end_src
The bookmark package implements a new bookmark (outline) organisation for package hyperref.
This lets us change the "tree-navigation" associated with the generated pdf and constrain the menu only to H:2.
#+begin_src latex
\usepackage{bookmark}
\bookmarksetup{depth=2}
#+end_src
** Index and glossaries
#+begin_src latex
\makeindex