Standard report format

.gitignore

@@ -1,58 +1,260 @@
-# -*- mode: gitignore; -*-
-*~
-\#*\#
-/.emacs.desktop
-/.emacs.desktop.lock
-*.elc
-auto-save-list
-tramp
-.\#*
-
-# Org-mode
-.org-id-locations
-*_archive
-
-# flymake-mode
-*_flymake.*
-
-# eshell files
-/eshell/history
-/eshell/lastdir
-
-# elpa packages
-/elpa/
-
-# reftex files
-*.rel
-
-# AUCTeX auto folder
-/auto/
-
-# cask packages
-.cask/
-dist/
-
-# Flycheck
-flycheck_*.el
-
-# server auth directory
-/server/
-
-# projectiles files
-.projectile
-
-# directory configuration
-.dir-locals.el
-
-# network security
-/network-security.data
-
-# bibtex
-*.aux
-*.bbl
-*.blg
-
-# Simulink
-*.autosave
-*.original
+mat/
+figures/
+ltximg/
 slprj/
+matlab/slprj/
+*.slxc
+
+
+# ============================================================
+# ============================================================
+# LATEX
+# ============================================================
+# ============================================================
+
+## Core latex/pdflatex auxiliary files:
+*.aux
+*.lof
+*.log
+*.lot
+*.fls
+*.out
+*.toc
+*.fmt
+*.fot
+*.cb
+*.cb2
+.*.lb
+
+## Intermediate documents:
+*.dvi
+*.xdv
+*-converted-to.*
+# these rules might exclude image files for figures etc.
+# *.ps
+# *.eps
+# *.pdf
+
+## Generated if empty string is given at "Please type another file name for output:"
+.pdf
+
+## Bibliography auxiliary files (bibtex/biblatex/biber):
+*.bbl
+*.bcf
+*.blg
+*-blx.aux
+*-blx.bib
+*.run.xml
+
+## Build tool auxiliary files:
+*.fdb_latexmk
+*.synctex
+*.synctex(busy)
+*.synctex.gz
+*.synctex.gz(busy)
+*.pdfsync
+
+## Build tool directories for auxiliary files
+# latexrun
+latex.out/
+
+## Auxiliary and intermediate files from other packages:
+# algorithms
+*.alg
+*.loa
+
+# achemso
+acs-*.bib
+
+# amsthm
+*.thm
+
+# beamer
+*.nav
+*.pre
+*.snm
+*.vrb
+
+# changes
+*.soc
+
+# cprotect
+*.cpt
+
+# elsarticle (documentclass of Elsevier journals)
+*.spl
+
+# endnotes
+*.ent
+
+# fixme
+*.lox
+
+# feynmf/feynmp
+*.mf
+*.mp
+*.t[1-9]
+*.t[1-9][0-9]
+*.tfm
+
+#(r)(e)ledmac/(r)(e)ledpar
+*.end
+*.?end
+*.[1-9]
+*.[1-9][0-9]
+*.[1-9][0-9][0-9]
+*.[1-9]R
+*.[1-9][0-9]R
+*.[1-9][0-9][0-9]R
+*.eledsec[1-9]
+*.eledsec[1-9]R
+*.eledsec[1-9][0-9]
+*.eledsec[1-9][0-9]R
+*.eledsec[1-9][0-9][0-9]
+*.eledsec[1-9][0-9][0-9]R
+
+# glossaries
+*.acn
+*.acr
+*.glg
+*.glo
+*.gls
+*.glsdefs
+
+# gnuplottex
+*-gnuplottex-*
+
+# gregoriotex
+*.gaux
+*.gtex
+
+# htlatex
+*.4ct
+*.4tc
+*.idv
+*.lg
+*.trc
+*.xref
+
+# hyperref
+*.brf
+
+# knitr
+*-concordance.tex
+# TODO Comment the next line if you want to keep your tikz graphics files
+*.tikz
+*-tikzDictionary
+
+# listings
+*.lol
+
+# makeidx
+*.idx
+*.ilg
+*.ind
+*.ist
+
+# minitoc
+*.maf
+*.mlf
+*.mlt
+*.mtc[0-9]*
+*.slf[0-9]*
+*.slt[0-9]*
+*.stc[0-9]*
+
+# minted
+_minted*
+*.pyg
+
+# morewrites
+*.mw
+
+# nomencl
+*.nlg
+*.nlo
+*.nls
+
+# pax
+*.pax
+
+# pdfpcnotes
+*.pdfpc
+
+# sagetex
+*.sagetex.sage
+*.sagetex.py
+*.sagetex.scmd
+
+# scrwfile
+*.wrt
+
+# sympy
+*.sout
+*.sympy
+sympy-plots-for-*.tex/
+
+# pdfcomment
+*.upa
+*.upb
+
+# pythontex
+*.pytxcode
+pythontex-files-*/
+
+# thmtools
+*.loe
+
+# TikZ & PGF
+*.dpth
+*.md5
+*.auxlock
+
+# todonotes
+*.tdo
+
+# easy-todo
+*.lod
+
+# xmpincl
+*.xmpi
+
+# xindy
+*.xdy
+
+# xypic precompiled matrices
+*.xyc
+
+# endfloat
+*.ttt
+*.fff
+
+# Latexian
+TSWLatexianTemp*
+
+## Editors:
+# WinEdt
+*.bak
+*.sav
+
+# Texpad
+.texpadtmp
+
+# LyX
+*.lyx~
+
+# Kile
+*.backup
+
+# KBibTeX
+*~[0-9]*
+
+# auto folder when using emacs and auctex
+./auto/*
+*.el
+
+# expex forward references with \gathertags
+*-tags.tex
+
+# standalone packages
+*.sta

.latexmkrc

@@ -0,0 +1,111 @@
+#!/bin/env perl
+
+# Shebang is only to get syntax highlighting right across GitLab, GitHub and IDEs.
+# This file is not meant to be run, but read by `latexmk`.
+
+# ======================================================================================
+# Perl `latexmk` configuration file
+# ======================================================================================
+
+# ======================================================================================
+# PDF Generation/Building/Compilation
+# ======================================================================================
+
+@default_files=('nass-rotating-3dof-model.tex');
+
+# PDF-generating modes are:
+# 1: pdflatex, as specified by $pdflatex variable (still largely in use)
+# 2: postscript conversion, as specified by the $ps2pdf variable (useless)
+# 3: dvi conversion, as specified by the $dvipdf variable (useless)
+# 4: lualatex, as specified by the $lualatex variable (best)
+# 5: xelatex, as specified by the $xelatex variable (second best)
+$pdf_mode = 1;
+
+# Treat undefined references and citations as well as multiply defined references as
+# ERRORS instead of WARNINGS.
+# This is only checked in the *last* run, since naturally, there are undefined references
+# in initial runs.
+# This setting is potentially annoying when debugging/editing, but highly desirable
+# in the CI pipeline, where such a warning should result in a failed pipeline, since the
+# final document is incomplete/corrupted.
+#
+# However, I could not eradicate all warnings, so that `latexmk` currently fails with
+# this option enabled.
+# Specifically, `microtype` fails together with `fontawesome`/`fontawesome5`, see:
+# https://tex.stackexchange.com/a/547514/120853
+# The fix in that answer did not help.
+# Setting `verbose=silent` to mute `microtype` warnings did not work.
+# Switching between `fontawesome` and `fontawesome5` did not help.
+$warnings_as_errors = 0;
+
+# Show used CPU time. Looks like: https://tex.stackexchange.com/a/312224/120853
+$show_time = 1;
+
+# Default is 5; we seem to need more owed to the complexity of the document.
+# Actual documents probably don't need this many since they won't use all features,
+# plus won't be compiling from cold each time.
+$max_repeat=7;
+
+# --shell-escape option (execution of code outside of latex) is required for the
+#'svg' package.
+# It converts raw SVG files to the PDF+PDF_TEX combo using InkScape.
+#
+# SyncTeX allows to jump between source (code) and output (PDF) in IDEs with support
+# (many have it). A value of `1` is enabled (gzipped), `-1` is enabled but uncompressed,
+# `0` is off.
+# Testing in VSCode w/ LaTeX Workshop only worked for the compressed version.
+# Adjust this as needed. Of course, only relevant for local use, no effect on a remote
+# CI pipeline (except for slower compilation, probably).
+#
+# %O and %S will forward Options and the Source file, respectively, given to latexmk.
+#
+# `set_tex_cmds` applies to all *latex commands (latex, xelatex, lualatex, ...), so
+# no need to specify these each. This allows to simply change `$pdf_mode` to get a
+# different engine. Check if this works with `latexmk --commands`.
+set_tex_cmds("--shell-escape -interaction=nonstopmode --synctex=1 %O %S");
+
+# Use default pdf viewer
+$pdf_previewer = 'zathura';
+
+# option 2 is same as 1 (run biber when necessary), but also deletes the
+# regeneratable bbl-file in a clenaup (`latexmk -c`). Do not use if original
+# bib file is not available!
+$bibtex_use = 2;  # default: 1
+
+# Change default `biber` call, help catch errors faster/clearer. See
+# https://web.archive.org/web/20200526101657/https://www.semipol.de/2018/06/12/latex-best-practices.html#database-entries
+$biber = "biber --validate-datamodel %O %S";
+
+# Glossaries
+add_cus_dep('glo', 'gls', 0, 'run_makeglossaries');
+add_cus_dep('acn', 'acr', 0, 'run_makeglossaries');
+
+sub run_makeglossaries {
+  if ( $silent ) {
+    system "makeglossaries -q -s '$_[0].ist' '$_[0]'";
+  }
+  else {
+    system "makeglossaries -s '$_[0].ist' '$_[0]'";
+  };
+}
+
+# ======================================================================================
+# Auxiliary Files
+# ======================================================================================
+
+# Let latexmk know about generated files, so they can be used to detect if a
+# rerun is required, or be deleted in a cleanup.
+# loe: List of Examples (KOMAScript)
+# lol: List of Listings (`listings` and `minted` packages)
+# run.xml: biber runs
+# glg: glossaries log
+# glstex: generated from glossaries-extra
+push @generated_exts, 'loe', 'lol', 'run.xml', 'glstex', 'glo', 'gls', 'glg', 'acn', 'acr', 'alg';
+
+# Also delete the *.glstex files from package glossaries-extra. Problem is,
+# that that package generates files of the form "basename-digit.glstex" if
+# multiple glossaries are present. Latexmk looks for "basename.glstex" and so
+# does not find those. For that purpose, use wildcard.
+# Also delete files generated by gnuplot/pgfplots contour plots
+# (.dat, .script, .table).
+$clean_ext = "%R-*.glstex %R_contourtmp*.*";

css/htmlize.css

@@ -1,145 +0,0 @@
-.org-bold { /* bold */ font-weight: bold; }
-.org-bold-italic { /* bold-italic */ font-weight: bold; font-style: italic; }
-.org-buffer-menu-buffer { /* buffer-menu-buffer */ font-weight: bold; }
-.org-builtin { /* font-lock-builtin-face */ color: #7a378b; }
-.org-button { /* button */ text-decoration: underline; }
-.org-calendar-today { /* calendar-today */ text-decoration: underline; }
-.org-change-log-acknowledgement { /* change-log-acknowledgement */ color: #b22222; }
-.org-change-log-conditionals { /* change-log-conditionals */ color: #a0522d; }
-.org-change-log-date { /* change-log-date */ color: #8b2252; }
-.org-change-log-email { /* change-log-email */ color: #a0522d; }
-.org-change-log-file { /* change-log-file */ color: #0000ff; }
-.org-change-log-function { /* change-log-function */ color: #a0522d; }
-.org-change-log-list { /* change-log-list */ color: #a020f0; }
-.org-change-log-name { /* change-log-name */ color: #008b8b; }
-.org-comint-highlight-input { /* comint-highlight-input */ font-weight: bold; }
-.org-comint-highlight-prompt { /* comint-highlight-prompt */ color: #00008b; }
-.org-comment { /* font-lock-comment-face */ color: #999988; font-style: italic; }
-.org-comment-delimiter { /* font-lock-comment-delimiter-face */ color: #999988; font-style: italic; }
-.org-completions-annotations { /* completions-annotations */ font-style: italic; }
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-.org-dired-symlink { /* dired-symlink */ color: #a020f0; }
-.org-dired-warning { /* dired-warning */ color: #ff0000; font-weight: bold; }
-.org-doc { /* font-lock-doc-face */ color: #8b2252; }
-.org-escape-glyph { /* escape-glyph */ color: #a52a2a; }
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-.org-flyspell-incorrect { /* flyspell-incorrect */ color: #ff4500; font-weight: bold; text-decoration: underline; }
-.org-fringe { /* fringe */ background-color: #f2f2f2; }
-.org-function-name { /* font-lock-function-name-face */ color: teal; }
-.org-header-line { /* header-line */ color: #333333; background-color: #e5e5e5; }
-.org-help-argument-name { /* help-argument-name */ font-style: italic; }
-.org-highlight { /* highlight */ background-color: #b4eeb4; }
-.org-holiday { /* holiday */ background-color: #ffc0cb; }
-.org-isearch { /* isearch */ color: #b0e2ff; background-color: #cd00cd; }
-.org-isearch-fail { /* isearch-fail */ background-color: #ffc1c1; }
-.org-italic { /* italic */ font-style: italic; }
-.org-keyword { /* font-lock-keyword-face */ color: #0086b3; }
-.org-lazy-highlight { /* lazy-highlight */ background-color: #afeeee; }
-.org-link { /* link */ color: #0000ff; text-decoration: underline; }
-.org-link-visited { /* link-visited */ color: #8b008b; text-decoration: underline; }
-.org-log-edit-header { /* log-edit-header */ color: #a020f0; }
-.org-log-edit-summary { /* log-edit-summary */ color: #0000ff; }
-.org-log-edit-unknown-header { /* log-edit-unknown-header */ color: #b22222; }
-.org-match { /* match */ background-color: #ffff00; }
-.org-next-error { /* next-error */ background-color: #eedc82; }
-.org-nobreak-space { /* nobreak-space */ color: #a52a2a; text-decoration: underline; }
-.org-org-archived { /* org-archived */ color: #7f7f7f; }
-.org-org-block { /* org-block */ color: #7f7f7f; }
-.org-org-block-begin-line { /* org-block-begin-line */ color: #b22222; }
-.org-org-block-end-line { /* org-block-end-line */ color: #b22222; }
-.org-org-checkbox { /* org-checkbox */ font-weight: bold; }
-.org-org-checkbox-statistics-done { /* org-checkbox-statistics-done */ color: #228b22; font-weight: bold; }
-.org-org-checkbox-statistics-todo { /* org-checkbox-statistics-todo */ color: #ff0000; font-weight: bold; }
-.org-org-clock-overlay { /* org-clock-overlay */ background-color: #ffff00; }
-.org-org-code { /* org-code */ color: #7f7f7f; }
-.org-org-column { /* org-column */ background-color: #e5e5e5; }
-.org-org-column-title { /* org-column-title */ background-color: #e5e5e5; font-weight: bold; text-decoration: underline; }
-.org-org-date { /* org-date */ color: #a020f0; text-decoration: underline; }
-.org-org-document-info { /* org-document-info */ color: #191970; }
-.org-org-document-info-keyword { /* org-document-info-keyword */ color: #7f7f7f; }
-.org-org-document-title { /* org-document-title */ color: #191970; font-size: 144%; font-weight: bold; }
-.org-org-done { /* org-done */ color: #228b22; font-weight: bold; }
-.org-org-drawer { /* org-drawer */ color: #0000ff; }
-.org-org-ellipsis { /* org-ellipsis */ color: #b8860b; text-decoration: underline; }
-.org-org-footnote { /* org-footnote */ color: #a020f0; text-decoration: underline; }
-.org-org-formula { /* org-formula */ color: #b22222; }
-.org-org-headline-done { /* org-headline-done */ color: #bc8f8f; }
-.org-org-hide { /* org-hide */ color: #ffffff; }
-.org-org-latex-and-export-specials { /* org-latex-and-export-specials */ color: #8b4513; }
-.org-org-level-1 { /* org-level-1 */ color: #0000ff; }
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-.org-org-level-3 { /* org-level-3 */ color: #a020f0; }
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-.org-org-meta-line { /* org-meta-line */ color: #b22222; }
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-.org-org-quote { /* org-quote */ color: #7f7f7f; }
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-.org-org-scheduled-today { /* org-scheduled-today */ color: #006400; }
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-.org-outline-7 { /* outline-7 */ color: #7a378b; }
-.org-outline-8 { /* outline-8 */ color: #8b2252; }
-.org-preprocessor { /* font-lock-preprocessor-face */ color: #7a378b; }
-.org-query-replace { /* query-replace */ color: #b0e2ff; background-color: #cd00cd; }
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-.org-underline { /* underline */ text-decoration: underline; }
-.org-variable-name { /* font-lock-variable-name-face */ color: teal; }
-.org-warning { /* font-lock-warning-face */ color: #ff0000; font-weight: bold; }
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