Re-run the analysis - disturbance from control

disturbance-control-system/index.org

@@ -141,15 +141,13 @@ First, we can look at the time domain data and compare all the measurements:
   legend('Location', 'bestoutside');
 #+end_src
 
-#+NAME: fig:time_domain_sample
-#+HEADER: :tangle no :exports results :results value raw replace :noweb yes
-#+begin_src matlab :var filepath="figs/time_domain_sample.pdf" :var figsize="full-tall" :post pdf2svg(file=*this*, ext="png")
-  <<plt-matlab>>
+#+begin_src matlab :tangle no :exports results :results file replace
+exportFig('figs/time_domain_sample.pdf', 'width', 'full', 'height', 'tall')
 #+end_src
 
-#+NAME: fig:time_domain_sample
-#+CAPTION: Comparison of the time domain data when turning off the control system of the stages - Geophone at the sample location
-#+RESULTS: fig:time_domain_sample
+#+name: fig:time_domain_sample
+#+caption: Comparison of the time domain data when turning off the control system of the stages - Geophone at the sample location
+#+RESULTS:
 [[file:figs/time_domain_sample.png]]
 
 #+begin_src matlab :results none
@@ -167,15 +165,13 @@ First, we can look at the time domain data and compare all the measurements:
   legend('Location', 'bestoutside');
 #+end_src
 
-#+NAME: fig:time_domain_marble
-#+HEADER: :tangle no :exports results :results value raw replace :noweb yes
-#+begin_src matlab :var filepath="figs/time_domain_marble.pdf" :var figsize="full-tall" :post pdf2svg(file=*this*, ext="png")
-  <<plt-matlab>>
+#+begin_src matlab :tangle no :exports results :results file replace
+exportFig('figs/time_domain_marble.pdf', 'width', 'full', 'height', 'tall')
 #+end_src
 
-#+NAME: fig:time_domain_marble
-#+CAPTION: Comparison of the time domain data when turning off the control system of the stages - Geophone on the marble
-#+RESULTS: fig:time_domain_marble
+#+name: fig:time_domain_marble
+#+caption: Comparison of the time domain data when turning off the control system of the stages - Geophone on the marble
+#+RESULTS:
 [[file:figs/time_domain_marble.png]]
 
 ** Analysis - Frequency Domain
@@ -207,7 +203,6 @@ And we compare all the signals (figures [[fig:psd_sample_comp]] and [[fig:psd_sa
   plot(f, sqrt(px6), 'DisplayName', 'Hexa, Rz');
   plot(f, sqrt(px7), 'DisplayName', 'Hexa');
   plot(f, sqrt(px8), 'DisplayName', 'All OFF');
-  plot(fgm, sqrt(pxxgm), '-k', 'DisplayName', 'Ground Velocity');
   hold off;
   set(gca, 'xscale', 'log');
   set(gca, 'yscale', 'log');
@@ -216,31 +211,26 @@ And we compare all the signals (figures [[fig:psd_sample_comp]] and [[fig:psd_sa
   legend('Location', 'southwest');
 #+end_src
 
-#+NAME: fig:psd_sample_comp
-#+HEADER: :tangle no :exports results :results value raw replace :noweb yes
-#+begin_src matlab :var filepath="figs/psd_sample_comp.pdf" :var figsize="full-tall" :post pdf2svg(file=*this*, ext="png")
-  <<plt-matlab>>
+#+begin_src matlab :tangle no :exports results :results file replace
+exportFig('figs/psd_sample_comp.pdf', 'width', 'full', 'height', 'tall')
 #+end_src
 
-#+NAME: fig:psd_sample_comp
-#+CAPTION: Amplitude Spectral Density of the signal coming from the top geophone
-#+RESULTS: fig:psd_sample_comp
+#+name: fig:psd_sample_comp
+#+caption: Amplitude Spectral Density of the signal coming from the top geophone
+#+RESULTS:
 [[file:figs/psd_sample_comp.png]]
 
-
 #+begin_src matlab :results none :tangle no :exports none
   xlim([80, 500]);
 #+end_src
 
-#+NAME: fig:psd_sample_comp_high_freq
-#+HEADER: :tangle no :exports results :results value raw replace :noweb yes
-#+begin_src matlab :var filepath="figs/psd_sample_comp_high_freq.pdf" :var figsize="full-tall" :post pdf2svg(file=*this*, ext="png")
-  <<plt-matlab>>
+#+begin_src matlab :tangle no :exports results :results file replace
+exportFig('figs/psd_sample_comp_high_freq.pdf', 'width', 'full', 'height', 'tall')
 #+end_src
 
-#+NAME: fig:psd_sample_comp_high_freq
-#+CAPTION: Amplitude Spectral Density of the signal coming from the top geophone (zoom at high frequencies)
-#+RESULTS: fig:psd_sample_comp_high_freq
+#+name: fig:psd_sample_comp_high_freq
+#+caption: Amplitude Spectral Density of the signal coming from the top geophone (zoom at high frequencies)
+#+RESULTS:
 [[file:figs/psd_sample_comp_high_freq.png]]
 
 *** Vibrations on the marble
@@ -264,7 +254,6 @@ And we compare the Amplitude Spectral Densities (figures [[fig:psd_marble_comp]]
   plot(f, sqrt(px6), 'DisplayName', 'Hexa, Rz');
   plot(f, sqrt(px7), 'DisplayName', 'Hexa');
   plot(f, sqrt(px8), 'DisplayName', 'All OFF');
-  plot(fgm, sqrt(pxxgm), '-k', 'DisplayName', 'Ground Velocity');
   hold off;
   set(gca, 'xscale', 'log');
   set(gca, 'yscale', 'log');
@@ -273,32 +262,27 @@ And we compare the Amplitude Spectral Densities (figures [[fig:psd_marble_comp]]
   legend('Location', 'northeast');
 #+end_src
 
-#+NAME: fig:psd_marble_comp
-#+HEADER: :tangle no :exports results :results value raw replace :noweb yes
-#+begin_src matlab :var filepath="figs/psd_marble_comp.pdf" :var figsize="full-tall" :post pdf2svg(file=*this*, ext="png")
-  <<plt-matlab>>
+#+begin_src matlab :tangle no :exports results :results file replace
+exportFig('figs/psd_marble_comp.pdf', 'width', 'full', 'height', 'tall')
 #+end_src
 
-#+NAME: fig:psd_marble_comp
-#+CAPTION: Amplitude Spectral Density of the signal coming from the top geophone
-#+RESULTS: fig:psd_marble_comp
+#+name: fig:psd_marble_comp
+#+caption: Amplitude Spectral Density of the signal coming from the top geophone
+#+RESULTS:
 [[file:figs/psd_marble_comp.png]]
 
-
 #+begin_src matlab :results none :tangle no :exports none
   legend('Location', 'southwest');
   xlim([80, 500]);
 #+end_src
 
-#+NAME: fig:psd_marble_comp_high_freq
-#+HEADER: :tangle no :exports results :results value raw replace :noweb yes
-#+begin_src matlab :var filepath="figs/psd_marble_comp_high_freq.pdf" :var figsize="full-tall" :post pdf2svg(file=*this*, ext="png")
-  <<plt-matlab>>
+#+begin_src matlab :tangle no :exports results :results file replace
+exportFig('figs/psd_marble_comp_high_freq.pdf', 'width', 'full', 'height', 'tall')
 #+end_src
 
-#+NAME: fig:psd_marble_comp_high_freq
-#+CAPTION: Amplitude Spectral Density of the signal coming from the top geophone (zoom at high frequencies)
-#+RESULTS: fig:psd_marble_comp_high_freq
+#+name: fig:psd_marble_comp_high_freq
+#+caption: Amplitude Spectral Density of the signal coming from the top geophone (zoom at high frequencies)
+#+RESULTS:
 [[file:figs/psd_marble_comp_high_freq.png]]
 
 ** Conclusion
@@ -397,7 +381,7 @@ We load the data of the z axis of two geophones.
 #+end_src
 
 ** Voltage to Velocity
-We convert the measured voltage to velocity using the function =voltageToVelocityL22= (accessible [[file:~/Cloud/These/meas/src/index.org][here]]).
+We convert the measured voltage to velocity using the function =voltageToVelocityL22= (accessible [[file:~/Cloud/thesis/meas/srcindex.org][here]]).
 
 #+begin_src matlab
   gain = 60; % [dB]
@@ -438,18 +422,15 @@ First, we can look at the time domain data and compare all the measurements:
   legend('Location', 'bestoutside');
 #+end_src
 
-#+NAME: fig:time_domain_sample_lpf
-#+HEADER: :tangle no :exports results :results value raw replace :noweb yes
-#+begin_src matlab :var filepath="figs/time_domain_sample_lpf.pdf" :var figsize="full-tall" :post pdf2svg(file=*this*, ext="png")
-  <<plt-matlab>>
+#+begin_src matlab :tangle no :exports results :results file replace
+exportFig('figs/time_domain_sample_lpf.pdf', 'width', 'full', 'height', 'tall')
 #+end_src
 
-#+NAME: fig:time_domain_sample_lpf
-#+CAPTION: Comparison of the time domain data when turning off the control system of the stages - Geophone at the sample location
-#+RESULTS: fig:time_domain_sample_lpf
+#+name: fig:time_domain_sample_lpf
+#+caption: Comparison of the time domain data when turning off the control system of the stages - Geophone at the sample location
+#+RESULTS:
 [[file:figs/time_domain_sample_lpf.png]]
 
-
 #+begin_src matlab
   figure;
   hold on;
@@ -465,15 +446,13 @@ First, we can look at the time domain data and compare all the measurements:
   legend('Location', 'bestoutside');
 #+end_src
 
-#+NAME: fig:time_domain_marble_lpf
-#+HEADER: :tangle no :exports results :results value raw replace :noweb yes
-#+begin_src matlab :var filepath="figs/time_domain_marble_lpf.pdf" :var figsize="full-tall" :post pdf2svg(file=*this*, ext="png")
-  <<plt-matlab>>
+#+begin_src matlab :tangle no :exports results :results file replace
+exportFig('figs/time_domain_marble_lpf.pdf', 'width', 'full', 'height', 'tall')
 #+end_src
 
-#+NAME: fig:time_domain_marble_lpf
-#+CAPTION: Comparison of the time domain data when turning off the control system of the stages - Geophone on the marble
-#+RESULTS: fig:time_domain_marble_lpf
+#+name: fig:time_domain_marble_lpf
+#+caption: Comparison of the time domain data when turning off the control system of the stages - Geophone on the marble
+#+RESULTS:
 [[file:figs/time_domain_marble_lpf.png]]
 
 #+begin_src matlab
@@ -491,15 +470,13 @@ First, we can look at the time domain data and compare all the measurements:
   legend('Location', 'bestoutside');
 #+end_src
 
-#+NAME: fig:time_domain_relative_disp
-#+HEADER: :tangle no :exports results :results value raw replace :noweb yes
-#+begin_src matlab :var filepath="figs/time_domain_relative_disp.pdf" :var figsize="full-tall" :post pdf2svg(file=*this*, ext="png")
-  <<plt-matlab>>
+#+begin_src matlab :tangle no :exports results :results file replace
+exportFig('figs/time_domain_relative_disp.pdf', 'width', 'full', 'height', 'tall')
 #+end_src
 
-#+NAME: fig:time_domain_relative_disp
-#+CAPTION: Relative displacement of the sample with respect to the marble
-#+RESULTS: fig:time_domain_relative_disp
+#+name: fig:time_domain_relative_disp
+#+caption: Relative displacement of the sample with respect to the marble
+#+RESULTS:
 [[file:figs/time_domain_relative_disp.png]]
 
 ** Analysis - Frequency Domain
@@ -539,15 +516,13 @@ And we compare all the signals (figures [[fig:psd_sample_comp_lpf]] and [[fig:ps
   legend('Location', 'southwest');
 #+end_src
 
-#+NAME: fig:psd_sample_comp_lpf
-#+HEADER: :tangle no :exports results :results value raw replace :noweb yes
-#+begin_src matlab :var filepath="figs/psd_sample_comp_lpf.pdf" :var figsize="full-tall" :post pdf2svg(file=*this*, ext="png")
-  <<plt-matlab>>
+#+begin_src matlab :tangle no :exports results :results file replace
+exportFig('figs/psd_sample_comp_lpf.pdf', 'width', 'full', 'height', 'tall')
 #+end_src
 
-#+NAME: fig:psd_sample_comp_lpf
-#+CAPTION: Amplitude Spectral Density of the sample velocity
-#+RESULTS: fig:psd_sample_comp_lpf
+#+name: fig:psd_sample_comp_lpf
+#+caption: Amplitude Spectral Density of the sample velocity
+#+RESULTS:
 [[file:figs/psd_sample_comp_lpf.png]]
 
 
@@ -555,15 +530,13 @@ And we compare all the signals (figures [[fig:psd_sample_comp_lpf]] and [[fig:ps
   xlim([80, 500]);
 #+end_src
 
-#+NAME: fig:psd_sample_comp_high_freq_lpf
-#+HEADER: :tangle no :exports results :results value raw replace :noweb yes
-#+begin_src matlab :var filepath="figs/psd_sample_comp_high_freq_lpf.pdf" :var figsize="full-tall" :post pdf2svg(file=*this*, ext="png")
-  <<plt-matlab>>
+#+begin_src matlab :tangle no :exports results :results file replace
+exportFig('figs/psd_sample_comp_high_freq_lpf.pdf', 'width', 'full', 'height', 'tall')
 #+end_src
 
-#+NAME: fig:psd_sample_comp_high_freq_lpf
-#+CAPTION: Amplitude Spectral Density of the sample velocity (zoom at high frequencies)
-#+RESULTS: fig:psd_sample_comp_high_freq_lpf
+#+name: fig:psd_sample_comp_high_freq_lpf
+#+caption: Amplitude Spectral Density of the sample velocity (zoom at high frequencies)
+#+RESULTS:
 [[file:figs/psd_sample_comp_high_freq_lpf.png]]
 
 *** Vibrations on the marble
@@ -577,7 +550,7 @@ Now we plot the same curves for the geophone located on the marble.
   [px_he, ~] = pwelch(d_he(:, 1), win, [], [], Fs);
 #+end_src
 
-And we compare the Amplitude Spectral Densities (figures [[fig:psd_marble_comp_lpf]] and [[fig:psd_marble_comp_lpf_high_freq]])
+And we compare the Amplitude Spectral Densities (figures [[fig:psd_marble_comp_lpf]] and [[fig:psd_marble_lpf_high_freq]])
 #+begin_src matlab
   figure;
   hold on;
@@ -595,55 +568,28 @@ And we compare the Amplitude Spectral Densities (figures [[fig:psd_marble_comp_l
   legend('Location', 'northeast');
 #+end_src
 
-#+NAME: fig:psd_marble_comp_lpf
-#+HEADER: :tangle no :exports results :results value raw replace :noweb yes
-#+begin_src matlab :var filepath="figs/psd_marble_comp_lpf.pdf" :var figsize="full-tall" :post pdf2svg(file=*this*, ext="png")
-  <<plt-matlab>>
+#+begin_src matlab :tangle no :exports results :results file replace
+exportFig('figs/psd_marble_comp_lpf.pdf', 'width', 'full', 'height', 'full')
 #+end_src
 
-#+NAME: fig:psd_marble_comp_lpf
-#+CAPTION: Amplitude Spectral Density of the marble velocity
-#+RESULTS: fig:psd_marble_comp_lpf
+#+name: fig:psd_marble_comp_lpf
+#+caption: Amplitude Spectral Density of the marble velocity
+#+RESULTS:
 [[file:figs/psd_marble_comp_lpf.png]]
 
-
 #+begin_src matlab :results none :tangle no :exports none
   legend('Location', 'southwest');
   xlim([80, 500]);
 #+end_src
 
-#+NAME: fig:psd_marble_comp_lpf_high_freq
-#+HEADER: :tangle no :exports results :results value raw replace :noweb yes
-#+begin_src matlab :var filepath="figs/psd_marble_comp_lpf_high_freq.pdf" :var figsize="full-tall" :post pdf2svg(file=*this*, ext="png")
-  <<plt-matlab>>
+#+begin_src matlab :tangle no :exports results :results file replace
+exportFig('figs/psd_marble_lpf_high_freq.pdf', 'width', 'full', 'height', 'tall')
 #+end_src
 
-#+NAME: fig:psd_marble_comp_lpf_high_freq
-#+CAPTION: Amplitude Spectral Density of the marble velocity (zoom at high frequencies)
-#+RESULTS: fig:psd_marble_comp_lpf_high_freq
-[[file:figs/psd_marble_comp_lpf_high_freq.png]]
-
-** Cumulative Amplitude Spectrum
-#+begin_src matlab
-  figure;
-  hold on;
-  plot(f(2:end), sqrt(cumsum(px_of(2:end)./(2*pi*f(2:end)).^2).*(f(2)-f(1))), 'DisplayName', 'All OFF');
-  plot(f(2:end), sqrt(cumsum(px_ty(2:end)./(2*pi*f(2:end)).^2).*(f(2)-f(1))), 'DisplayName', 'Ty ON');
-  plot(f(2:end), sqrt(cumsum(px_ry(2:end)./(2*pi*f(2:end)).^2).*(f(2)-f(1))), 'DisplayName', 'Ry ON');
-  plot(f(2:end), sqrt(cumsum(px_sr(2:end)./(2*pi*f(2:end)).^2).*(f(2)-f(1))), 'DisplayName', 'S-R ON');
-  plot(f(2:end), sqrt(cumsum(px_rz(2:end)./(2*pi*f(2:end)).^2).*(f(2)-f(1))), 'DisplayName', 'Rz ON');
-  plot(f(2:end), sqrt(cumsum(px_he(2:end)./(2*pi*f(2:end)).^2).*(f(2)-f(1))), 'DisplayName', 'Hexa ON');
-  hold off;
-  set(gca, 'xscale', 'log');
-  set(gca, 'yscale', 'log');
-  xlabel('Frequency [Hz]'); ylabel('Amplitude Spectral Density $\left[\frac{m}{\sqrt{Hz}}\right]$')
-  xlim([0.1, 500]);
-  legend('Location', 'northeast');
-#+end_src
-
-#+begin_src matlab
-
-#+end_src
+#+name: fig:psd_marble_lpf_high_freq
+#+caption: Amplitude Spectral Density of the marble velocity (zoom at high frequencies)
+#+RESULTS:
+[[file:figs/psd_marble_lpf_high_freq.png]]
 
 ** Conclusion
 #+begin_important
@@ -731,15 +677,13 @@ We load the data of the z axis of two geophones.
   legend('Location', 'bestoutside');
 #+end_src
 
-#+NAME: fig:time_domain_hexa_driver
-#+HEADER: :tangle no :exports results :results value raw replace :noweb yes
-#+begin_src matlab :var filepath="figs/time_domain_hexa_driver.pdf" :var figsize="full-tall" :post pdf2svg(file=*this*, ext="png")
-  <<plt-matlab>>
+#+begin_src matlab :tangle no :exports results :results file replace
+exportFig('figs/time_domain_hexa_driver.pdf', 'width', 'full', 'height', 'tall')
 #+end_src
 
-#+NAME: fig:time_domain_hexa_driver
-#+CAPTION: Comparison of the time domain data when turning off the control system of the stages - Geophone at the sample location
-#+RESULTS: fig:time_domain_hexa_driver
+#+name: fig:time_domain_hexa_driver
+#+caption: Comparison of the time domain data when turning off the control system of the stages - Geophone at the sample location
+#+RESULTS:
 [[file:figs/time_domain_hexa_driver.png]]
 
 ** Analysis - Frequency Domain
@@ -770,31 +714,26 @@ First, we compute the Power Spectral Density of the signals coming from the Geop
   legend('Location', 'southwest');
 #+end_src
 
-#+NAME: fig:psd_hexa_driver
-#+HEADER: :tangle no :exports results :results value raw replace :noweb yes
-#+begin_src matlab :var filepath="figs/psd_hexa_driver.pdf" :var figsize="full-tall" :post pdf2svg(file=*this*, ext="png")
-  <<plt-matlab>>
+#+begin_src matlab :tangle no :exports results :results file replace
+exportFig('figs/psd_hexa_driver.pdf', 'width', 'full', 'height', 'tall')
 #+end_src
 
-#+NAME: fig:psd_hexa_driver
-#+CAPTION: Amplitude Spectral Density of the signal coming from the top geophone
-#+RESULTS: fig:psd_hexa_driver
+#+name: fig:psd_hexa_driver
+#+caption: Amplitude Spectral Density of the signal coming from the top geophone
+#+RESULTS:
 [[file:figs/psd_hexa_driver.png]]
 
-
 #+begin_src matlab :results none :tangle no :exports none
   xlim([80, 500]);
 #+end_src
 
-#+NAME: fig:psd_hexa_driver_high_freq
-#+HEADER: :tangle no :exports results :results value raw replace :noweb yes
-#+begin_src matlab :var filepath="figs/psd_hexa_driver_high_freq.pdf" :var figsize="full-tall" :post pdf2svg(file=*this*, ext="png")
-  <<plt-matlab>>
+#+begin_src matlab :tangle no :exports results :results file replace
+exportFig('figs/psd_hexa_driver_high_freq.pdf', 'width', 'full', 'height', 'tall')
 #+end_src
 
-#+NAME: fig:psd_hexa_driver_high_freq
-#+CAPTION: Amplitude Spectral Density of the signal coming from the top geophone (zoom at high frequencies)
-#+RESULTS: fig:psd_hexa_driver_high_freq
+#+name: fig:psd_hexa_driver_high_freq
+#+caption: Amplitude Spectral Density of the signal coming from the top geophone (zoom at high frequencies)
+#+RESULTS:
 [[file:figs/psd_hexa_driver_high_freq.png]]
 
 ** Conclusion