Add glossary and accronyms

config.tex

@@ -1,18 +1,18 @@
-\usepackage[        % use biblatex for bibliography
+% Units
-    backend=biber,  % use biber backend (bibtex replacement) or bibtex
+\usepackage{siunitx}
-    style=ieee,     % bib style
-    natbib=true,    % allow natbib commands
-    hyperref=true,  % activate hyperref support
-    backref=true,   % activate backrefs
-    isbn=false,     % don't show isbn tags
-    url=false,      % don't show url tags
-    doi=false,      % don't show doi tags
-    urldate=long,   % display type for dates
-    maxnames=3,     %
-    minnames=1,     %
-    maxbibnames=5,  %
-    minbibnames=3,  %
-    maxcitenames=2, %
-    mincitenames=1  %
-]{biblatex}
 
+% Tables
+\usepackage{booktabs} % Also used for glossaries
+
+% Glossary and Acronyms
+\usepackage[      %
+    acronym,      % Separate acronyms and glossary
+    toc,          % appear in ToC
+    automake,     % auto-use the makeglossaries command (requires shell-escape)
+    nonumberlist, % don't back reference pages
+    nogroupskip,  % don't group by letter
+    nopostdot     % don't add a dot at the end of each element
+]{glossaries}
+\usepackage[stylemods=longextra]{glossaries-extra}
+\setabbreviationstyle[acronym]{long-short}
+\setglossarystyle{long-name-desc}

config_extra.tex

@@ -0,0 +1,21 @@
+% Bibliography
+\usepackage[        % use biblatex for bibliography
+    backend=biber,  % use biber backend (bibtex replacement) or bibtex
+    style=ieee,     % bib style
+    hyperref=true,  % activate hyperref support
+    backref=true,   % activate backrefs
+    isbn=false,     % don't show isbn tags
+    url=false,      % don't show url tags
+    doi=false,      % don't show doi tags
+    urldate=long,   % display type for dates
+    maxnames=3,     %
+    minnames=1,     %
+    maxbibnames=5,  %
+    minbibnames=3,  %
+    maxcitenames=2, %
+    mincitenames=1  %
+]{biblatex}
+\addbibresource{ref.bib}
+
+% Glossary
+\makeglossaries{}

phd-thesis.org

@@ -8,10 +8,12 @@
 #+DATE: {{{time(%Y-%m-%d)}}}
 
 #+LATEX_CLASS: scrreprt
+#+LATEX_CLASS_OPTIONS: [a4paper, DIV=14, onecolumn, bibliography=totoc, twoside, openright]
+
+#+BIND: org-latex-bib-compiler "biber"
 
 #+LATEX_HEADER: \input{config.tex}
-
+#+LATEX_HEADER_EXTRA: \input{config_extra.tex}
-#+LATEX_HEADER: \addbibresource{ref.bib}
 :END:
 
 * Build                                                            :noexport:
@@ -20,10 +22,53 @@
 (add-to-list 'org-latex-classes
              '("scrreprt"
                "\\documentclass{scrreprt}"
+               ("\\chapter{%s}" . "\\chapter*{%s}")
                ("\\section{%s}" . "\\section*{%s}")
                ("\\subsection{%s}" . "\\subsection*{%s}")
                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
                ("\\paragraph{%s}" . "\\paragraph*{%s}")
-                 ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))
+               ))
-               )
+
+  (defun delete-org-comments (backend)
+    (loop for comment in (reverse (org-element-map (org-element-parse-buffer)
+                                      'comment 'identity))
+          do
+          (setf (buffer-substring (org-element-property :begin comment)
+                                  (org-element-property :end comment))
+                "")))
+
+  ;; add to export hook
+  (add-hook 'org-export-before-processing-hook 'delete-org-comments)
+
+  (setq org-latex-packages-alist nil)
+  (setq org-latex-default-packages-alist nil)
 #+END_SRC
+
+* Glossary and Acronyms - Tables                                      :ignore:
+
+#+name: glossary
+| label | name              | description           |
+|-------+-------------------+-----------------------|
+| ka    | \ensuremath{k_a}  | Actuator Stiffness in |
+| phi   | \ensuremath{\phi} | A woody bush          |
+
+#+name: acronyms
+| Key  | Short | Long                             |
+|------+-------+----------------------------------|
+| mimo | MIMO  | Multiple-Inputs Multiple-Outputs |
+| siso | SISO  | Single-Input Single-Output       |
+| nass | NASS  | Nano Active Stabilization System |
+| lti  | LTI   | Linear Time Invariant            |
+
+* Test
+** Test
+- acronyms ac:mimo, ac:siso, and again ac:mimo
+- glossary terms gls:ka, gls:phi.
+- Bibliography citations: cite:dehaeze21_activ_dampin_rotat_platf_using,dehaeze18_sampl_stabil_for_tomog_exper
+
+* Bibliography                                                        :ignore:
+#+latex: \printbibliography
+
+* Glossary                                                            :ignore:
+#+latex: \printglossary[type=\acronymtype]
+#+latex: \printglossary

phd-thesis.tex

@@ -1,37 +1,36 @@
-% Created 2019-10-08 mar. 16:02
+% Created 2021-05-19 mer. 17:31
 % Intended LaTeX compiler: pdflatex
-\documentclass{scrreprt}
+\documentclass[a4paper, DIV=14, onecolumn, bibliography=totoc, twoside, openright]{scrreprt}
-\usepackage[utf8]{inputenc}
+
-\usepackage[T1]{fontenc}
-\usepackage{graphicx}
-\usepackage{grffile}
-\usepackage{longtable}
-\usepackage{wrapfig}
-\usepackage{rotating}
-\usepackage[normalem]{ulem}
-\usepackage{amsmath}
-\usepackage{textcomp}
-\usepackage{amssymb}
-\usepackage{capt-of}
-\usepackage{hyperref}
-\usepackage[most]{tcolorbox}
-\usepackage{siunitx}
 \input{config.tex}
-\addbibresource{ref.bib}
+\newglossaryentry{ka}{name=\ensuremath{k_a},description={{Actuator Stiffness in}}}
+\newglossaryentry{phi}{name=\ensuremath{\phi},description={{A woody bush}}}
+\newacronym{mimo}{MIMO}{Multiple-Inputs Multiple-Outputs}
+\newacronym{siso}{SISO}{Single-Input Single-Output}
+\newacronym{nass}{NASS}{Nano Active Stabilization System}
+\newacronym{lti}{LTI}{Linear Time Invariant}
+\input{config_extra.tex}
 \author{Dehaeze Thomas}
-\date{2019-10-08}
+\date{2021-05-19}
 \title{PhD Thesis}
-\hypersetup{
- pdfauthor={Dehaeze Thomas},
- pdftitle={PhD Thesis},
- pdfkeywords={},
- pdfsubject={},
- pdfcreator={Emacs 26.3 (Org mode 9.2.6)},
- pdflang={English}}
 \begin{document}
 
 \maketitle
 \tableofcontents
 
 
+\chapter{Test}
+\label{sec:org7e1d1fa}
+\section{Test}
+\label{sec:org71711f0}
+\begin{itemize}
+\item acronyms \gls{mimo}, \gls{siso}, and again \gls{mimo}
+\item glossary terms \gls{ka}, \gls{phi}.
+\item Bibliography citations: \cite{dehaeze21_activ_dampin_rotat_platf_using,dehaeze18_sampl_stabil_for_tomog_exper}
+\end{itemize}
+
+\printbibliography
+
+\printglossary[type=\acronymtype]
+\printglossary
 \end{document}

ref.bib

@@ -0,0 +1,28 @@
+@article{dehaeze21_activ_dampin_rotat_platf_using,
+  author = {Thomas Dehaeze and Christophe Collette},
+  title = {Active Damping of Rotating Platforms Using Integral Force Feedback},
+  journal = {Engineering Research Express},
+  year = {2021},
+  doi = {10.1088/2631-8695/abe803},
+  url = {https://doi.org/10.1088/2631-8695/abe803},
+  month = {Feb},
+}
+
+@inproceedings{dehaeze18_sampl_stabil_for_tomog_exper,
+  author = {Thomas Dehaeze and M. Magnin Mattenet and Christophe Collette},
+  title = {Sample Stabilization For Tomography Experiments In Presence Of Large Plant Uncertainty},
+  booktitle = {MEDSI'18},
+  year = {2018},
+  number = {10},
+  pages = {153--157},
+  doi = {10.18429/JACoW-MEDSI2018-WEOAMA02},
+  url = {https://doi.org/10.18429/JACoW-MEDSI2018-WEOAMA02},
+  address = {Geneva, Switzerland},
+  isbn = {978-3-95450-207-3},
+  keywords = {nass},
+  language = {english},
+  month = {Dec},
+  publisher = {JACoW Publishing},
+  series = {Mechanical Engineering Design of Synchrotron Radiation Equipment and Instrumentation},
+  venue = {Paris, France},
+}