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Add setup.org file that outputs config.tex

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Thomas Dehaeze 2021-05-19 19:05:52 +02:00
parent faf652e62e
commit 4dd255a90e
6 changed files with 552 additions and 32 deletions
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165
config.tex
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@ -1,10 +1,11 @@
% Units
\usepackage{siunitx}
\usepackage[french,english]{babel}
% Tables
\usepackage{booktabs} % Also used for glossaries
\usepackage{graphicx}
\graphicspath{{figs/}}
\usepackage{subcaption}
\captionsetup{subrefformat=parens}
% Glossary and Acronyms
\usepackage[ %
acronym, % Separate acronyms and glossary
toc, % appear in ToC
@ -13,6 +14,160 @@
nogroupskip, % don't group by letter
nopostdot % don't add a dot at the end of each element
]{glossaries}
\usepackage[stylemods=longextra]{glossaries-extra}
\setabbreviationstyle[acronym]{long-short}
\setglossarystyle{long-name-desc}
\usepackage[olditem,oldenum]{paralist}
\RequirePackage{setspace}
\onehalfspacing
\usepackage{booktabs}
\usepackage{multirow}
\usepackage[binary-units=true]{siunitx}
\sisetup{%
detect-all = true,
detect-family = true,
detect-mode = true,
detect-shape = true,
detect-weight = true,
detect-inline-weight = math,
}
\DeclareSIUnit\px{px}
\DeclareSIUnit\rms{rms}
\usepackage{amsmath}
\usepackage{amsthm}
\usepackage{dsfont}
\let\originalleft\left
\let\originalright\right
\renewcommand{\left}{\mathopen{}\mathclose\bgroup\originalleft}
\renewcommand{\right}{\aftergroup\egroup\originalright}
\clubpenalty = 10000
\widowpenalty = 10000
\displaywidowpenalty = 10000
\usepackage{scrlayer-scrpage}
\pagestyle{scrheadings}
\renewcommand{\partformat}{\huge\partname~\thepart\autodot}
\renewcommand{\raggedpart}{\flushleft}
\setkomafont{part}{\normalfont\huge\scshape}
\setkomafont{sectioning}{\normalfont\scshape}
\setkomafont{descriptionlabel}{\normalfont\bfseries}
\setkomafont{caption}{\small}
\setkomafont{captionlabel}{\usekomafont{caption}}
% Large number for chapter
\renewcommand*{\chapterformat}{%
\fontsize{50}{55}\selectfont\thechapter\autodot\enskip
}
\makeatletter
\renewcommand*{\chapterformat}{ \mbox{\chapappifchapterprefix{\nobreakspace}{\color{BrickRed}\fontsize{40}{45}\selectfont\thechapter}\autodot\enskip}}
\renewcommand\@seccntformat[1]{\color{BrickRed} {\csname the#1\endcsname}\hspace{0.3em}}
\makeatother
\renewcommand{\floatpagefraction}{.8}%
\usepackage{etoolbox}
\usepackage[ %
colorlinks=true, %
citecolor=BrickRed, %
linkcolor=BrickRed, %
urlcolor=BrickRed, %
unicode %
]{hyperref}
\usepackage{bookmark}
\bookmarksetup{depth=2}
\usepackage[ % use biblatex for bibliography
backend=biber, % use biber backend (bibtex replacement) or bibtex
style=ieee, % bib style
hyperref=true, % activate hyperref support
backref=true, % activate backrefs
isbn=false, % don't show isbn tags
url=false, % don't show url tags
doi=false, % don't show doi tags
urldate=long, % display type for dates
maxnames=3, %
minnames=1, %
maxbibnames=5, %
minbibnames=3, %
maxcitenames=2, %
mincitenames=1 %
]{biblatex}
\addbibresource{ref.bib}
\AtEveryBibitem{%
\clearfield{urlyear}
\clearfield{urlmonth}
\clearfield{note}
\clearfield{issn} % Remove issn
\clearfield{doi} % Remove doi
\ifentrytype{online}{}{% Remove url except for @online
\clearfield{url}
}
}
\setlength\bibitemsep{1.1\itemsep}
\renewcommand*{\bibfont}{\footnotesize}
\usepackage[sf, scaled=0.9]{quattrocento}
\usepackage{crimson}
\usepackage[oldstyle, scale=0.7]{sourcecodepro}
\usepackage[usenames,dvipsnames]{xcolor}
\usepackage{csquotes}
\def\signed #1{{\leavevmode\unskip\nobreak\hfil\penalty50\hskip1em
\hbox{}\nobreak\hfill #1%
\parfillskip=0pt \finalhyphendemerits=0 \endgraf}}
\newsavebox\mybox
\newenvironment{aquote}[1]
{\savebox\mybox{#1}\begin{quote}\openautoquote\hspace*{-.7ex}}
{\unskip\closeautoquote\vspace*{1mm}\signed{\usebox\mybox}\end{quote}}
\usepackage{setspace}
\setstretch{1.25}
\setparsizes{0em}{0.1\baselineskip plus .1\baselineskip}{1em plus 1fil}
\usepackage{floatrow}
\floatsetup[table]{font={footnotesize,sf},capposition=top}
\numberwithin{equation}{chapter}
\usepackage{listings}
\usepackage{minted}
\setminted{autogobble=true,fontsize=\small,baselinestretch=0.8}
\setminted[python]{python3=true,tabsize=4}
\usemintedstyle{trac}
\lstset{abovecaptionskip=0}
\renewcommand{\listingscaption}{Code Snippet}
\AtEndEnvironment{listing}{\vspace{-16pt}}
\usepackage{scrhack}

23
config_extra.tex
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@ -1,21 +1,2 @@
% Bibliography
\usepackage[ % use biblatex for bibliography
backend=biber, % use biber backend (bibtex replacement) or bibtex
style=ieee, % bib style
hyperref=true, % activate hyperref support
backref=true, % activate backrefs
isbn=false, % don't show isbn tags
url=false, % don't show url tags
doi=false, % don't show doi tags
urldate=long, % display type for dates
maxnames=3, %
minnames=1, %
maxbibnames=5, %
minbibnames=3, %
maxcitenames=2, %
mincitenames=1 %
]{biblatex}
\addbibresource{ref.bib}
% Glossary
\makeglossaries{}
\makeindex
\makeglossaries

13
phd-thesis.org
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@ -8,7 +8,7 @@
#+DATE: {{{time(%Y-%m-%d)}}}
#+LATEX_CLASS: scrreprt
#+LATEX_CLASS_OPTIONS: [a4paper, DIV=14, onecolumn, bibliography=totoc, twoside, openright]
#+LATEX_CLASS_OPTIONS: [a4paper, twoside, 11pt, onecolumn, bibliography=totoc, openright]
#+BIND: org-latex-bib-compiler "biber"
@ -60,12 +60,23 @@
| nass | NASS | Nano Active Stabilization System |
| lti | LTI | Linear Time Invariant |
* TODO Title Page :noexport:
* Test
** Test
- acronyms ac:mimo, ac:siso, and again ac:mimo
- glossary terms gls:ka, gls:phi.
- Bibliography citations: cite:dehaeze21_activ_dampin_rotat_platf_using,dehaeze18_sampl_stabil_for_tomog_exper
** blabla
*** sdlfk
*** sldkjf asdf
**** lksdfjasd
**** lksdfjasd
**** lksdfjasd
** blabla
* Test
* Bibliography :ignore:
#+latex: \printbibliography

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phd-thesis.pdf
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33
phd-thesis.tex
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@ -1,6 +1,6 @@
% Created 2021-05-19 mer. 17:31
% Created 2021-05-19 mer. 19:03
% Intended LaTeX compiler: pdflatex
\documentclass[a4paper, DIV=14, onecolumn, bibliography=totoc, twoside, openright]{scrreprt}
\documentclass[a4paper, twoside, 11pt, onecolumn, bibliography=totoc, openright]{scrreprt}
\input{config.tex}
\newglossaryentry{ka}{name=\ensuremath{k_a},description={{Actuator Stiffness in}}}
@ -13,6 +13,13 @@
\author{Dehaeze Thomas}
\date{2021-05-19}
\title{PhD Thesis}
\hypersetup{
pdfauthor={Dehaeze Thomas},
pdftitle={PhD Thesis},
pdfkeywords={},
pdfsubject={},
pdfcreator={Emacs 27.2 (Org mode 9.5)},
pdflang={English}}
\begin{document}
\maketitle
@ -20,15 +27,33 @@
\chapter{Test}
\label{sec:org7e1d1fa}
\label{sec:org602fc31}
\section{Test}
\label{sec:org71711f0}
\label{sec:orgd35e72e}
\begin{itemize}
\item acronyms \gls{mimo}, \gls{siso}, and again \gls{mimo}
\item glossary terms \gls{ka}, \gls{phi}.
\item Bibliography citations: \cite{dehaeze21_activ_dampin_rotat_platf_using,dehaeze18_sampl_stabil_for_tomog_exper}
\end{itemize}
\section{blabla}
\label{sec:org129c06d}
\subsection{sdlfk}
\label{sec:org2e5c262}
\subsection{sldkjf asdf}
\label{sec:org7d13a1b}
\subsubsection{lksdfjasd}
\label{sec:orgb2b4c9c}
\subsubsection{lksdfjasd}
\label{sec:org9d3084d}
\subsubsection{lksdfjasd}
\label{sec:orgf226c03}
\section{blabla}
\label{sec:orgb398faf}
\chapter{Test}
\label{sec:org5dc49e4}
\printbibliography
\printglossary[type=\acronymtype]

348
setup.org Normal file
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@ -0,0 +1,348 @@
#+TITLE: Setup file
#+PROPERTY: header-args:latex :tangle config.tex
* Babel
#+begin_src latex
\usepackage[french,english]{babel}
#+end_src
* Figures
#+begin_src latex
\usepackage{graphicx}
\graphicspath{{figs/}}
#+end_src
* Captions
#+begin_src latex
\usepackage{subcaption}
\captionsetup{subrefformat=parens}
#+end_src
* Glossary
#+begin_src latex
\usepackage[ %
acronym, % Separate acronyms and glossary
toc, % appear in ToC
automake, % auto-use the makeglossaries command (requires shell-escape)
nonumberlist, % don't back reference pages
nogroupskip, % don't group by letter
nopostdot % don't add a dot at the end of each element
]{glossaries}
\usepackage[stylemods=longextra]{glossaries-extra}
\setabbreviationstyle[acronym]{long-short}
\setglossarystyle{long-name-desc}
#+end_src
#+begin_src latex :tangle config_extra.tex
\makeindex
\makeglossaries
#+end_src
* Lists
Do not modify itemize/enumerate environments by default
#+begin_src latex
\usepackage[olditem,oldenum]{paralist}
#+end_src
* Spacing
#+begin_src latex
\RequirePackage{setspace}
\onehalfspacing
#+end_src
* Tables
#+begin_src latex
\usepackage{booktabs}
\usepackage{multirow}
#+end_src
* Units
#+begin_src latex
\usepackage[binary-units=true]{siunitx}
\sisetup{%
detect-all = true,
detect-family = true,
detect-mode = true,
detect-shape = true,
detect-weight = true,
detect-inline-weight = math,
}
\DeclareSIUnit\px{px}
\DeclareSIUnit\rms{rms}
#+end_src
* Mathematics
#+begin_src latex
\usepackage{amsmath}
\usepackage{amsthm}
\usepackage{dsfont}
#+end_src
Fix the spacing of =\left= and =\right=.
Use these with the proper bracket in order to ensure that they scale automatically.
#+begin_src latex
\let\originalleft\left
\let\originalright\right
\renewcommand{\left}{\mathopen{}\mathclose\bgroup\originalleft}
\renewcommand{\right}{\aftergroup\egroup\originalright}
#+end_src
* Geometry
# \usepackage[paperheight=24.41cm,paperwidth=17.21cm,bottom=3cm,left=1.4cm,right=2cm,heightrounded]{geometry}
* Penalties
#+begin_src latex
\clubpenalty = 10000
\widowpenalty = 10000
\displaywidowpenalty = 10000
#+end_src
* Headers
#+begin_src latex
\usepackage{scrlayer-scrpage}
\pagestyle{scrheadings}
#+end_src
* Section/Figure format
#+begin_src latex
\renewcommand{\partformat}{\huge\partname~\thepart\autodot}
\renewcommand{\raggedpart}{\flushleft}
\setkomafont{part}{\normalfont\huge\scshape}
\setkomafont{sectioning}{\normalfont\scshape}
\setkomafont{descriptionlabel}{\normalfont\bfseries}
\setkomafont{caption}{\small}
\setkomafont{captionlabel}{\usekomafont{caption}}
% Large number for chapter
\renewcommand*{\chapterformat}{%
\fontsize{50}{55}\selectfont\thechapter\autodot\enskip
}
#+end_src
Improve chapter font colors and font size.
The following commands make chapter numbers BrickRed.
#+begin_src latex
\makeatletter
\renewcommand*{\chapterformat}{ \mbox{\chapappifchapterprefix{\nobreakspace}{\color{BrickRed}\fontsize{40}{45}\selectfont\thechapter}\autodot\enskip}}
\renewcommand\@seccntformat[1]{\color{BrickRed} {\csname the#1\endcsname}\hspace{0.3em}}
\makeatother
#+end_src
* Floating images configuration
By default, if a figure consumes 60% of the page it will get its own float-page.
To change that we have to adjust the value of the =floatpagefraction= derivative.
#+begin_src latex
\renewcommand{\floatpagefraction}{.8}%
#+end_src
See more information [[https://tex.stackexchange.com/questions/68516/avoid-that-figure-gets-its-own-page][here]].
* Etoolbox package
#+begin_src latex
\usepackage{etoolbox}
#+end_src
* Hyperref and Bookmarks
#+begin_src latex
\usepackage[ %
colorlinks=true, %
citecolor=BrickRed, %
linkcolor=BrickRed, %
urlcolor=BrickRed, %
unicode %
]{hyperref}
#+end_src
The bookmark package implements a new bookmark (outline) organisation for package hyperref.
This lets us change the "tree-navigation" associated with the generated pdf and constrain the menu only to H:2.
#+begin_src latex
\usepackage{bookmark}
\bookmarksetup{depth=2}
#+end_src
* Bibliography
#+begin_src latex
\usepackage[ % use biblatex for bibliography
backend=biber, % use biber backend (bibtex replacement) or bibtex
style=ieee, % bib style
hyperref=true, % activate hyperref support
backref=true, % activate backrefs
isbn=false, % don't show isbn tags
url=false, % don't show url tags
doi=false, % don't show doi tags
urldate=long, % display type for dates
maxnames=3, %
minnames=1, %
maxbibnames=5, %
minbibnames=3, %
maxcitenames=2, %
mincitenames=1 %
]{biblatex}
#+end_src
#+begin_src latex
\addbibresource{ref.bib}
#+end_src
Remove ISSN, DOI and URL to shorten the bibliography.
#+begin_src latex
\AtEveryBibitem{%
\clearfield{urlyear}
\clearfield{urlmonth}
\clearfield{note}
\clearfield{issn} % Remove issn
\clearfield{doi} % Remove doi
\ifentrytype{online}{}{% Remove url except for @online
\clearfield{url}
}
}
#+end_src
And increase the spacing between the entries, as per default they are too small.
#+begin_src latex
\setlength\bibitemsep{1.1\itemsep}
#+end_src
Also reduce the font-size
#+begin_src latex
\renewcommand*{\bibfont}{\footnotesize}
#+end_src
* Fonts
https://tug.org/FontCatalogue/quattrocento/
#+begin_src latex
\usepackage[sf, scaled=0.9]{quattrocento}
#+end_src
https://tug.org/FontCatalogue/crimsonproregular/
#+begin_src latex
\usepackage{crimson}
#+end_src
https://tug.org/FontCatalogue/sourcecodepro/
#+begin_src latex
\usepackage[oldstyle, scale=0.7]{sourcecodepro}
#+end_src
* Colors
#+begin_src latex
\usepackage[usenames,dvipsnames]{xcolor}
#+end_src
* CS Quotes
The [[https://ctan.org/pkg/csquotes][csquotes]] package offers context sensitive quotation facilities, improving the typesetting of inline quotes.
#+begin_src latex
\usepackage{csquotes}
#+end_src
To enclose quote environments with quotes from csquotes, see [[https://tex.stackexchange.com/questions/365231/enclose-a-custom-quote-environment-in-quotes-from-csquotes][the following TeX SE thread]].
#+begin_src latex
\def\signed #1{{\leavevmode\unskip\nobreak\hfil\penalty50\hskip1em
\hbox{}\nobreak\hfill #1%
\parfillskip=0pt \finalhyphendemerits=0 \endgraf}}
\newsavebox\mybox
\newenvironment{aquote}[1]
{\savebox\mybox{#1}\begin{quote}\openautoquote\hspace*{-.7ex}}
{\unskip\closeautoquote\vspace*{1mm}\signed{\usebox\mybox}\end{quote}}
#+end_src
And then use quotes as:
#+begin_example
# The options derivative adds text after the environment. We use it to add the author.
#+ATTR_LATEX: :options {\cite{Frahm1994}}
#+begin_aquote
/Current (fMRI) applications often rely on "effects" or "statistically significant differences", rather than on a proper analysis of the relationship between neuronal activity, haemodynamic consequences, and MRI physics./
#+end_aquote
#+end_example
Note that org-ref links won't work here because the attr latex will be pasted as-is in the .tex file.
* Setspace for controlling line spacing
#+begin_src latex
\usepackage{setspace}
\setstretch{1.25}
#+end_src
* Parskip
Fine tuning of spacing between paragraphs. See [[https://tex.stackexchange.com/questions/161254/smaller-parskip-than-half-for-koma-script][thread here]].
#+begin_src latex
\setparsizes{0em}{0.1\baselineskip plus .1\baselineskip}{1em plus 1fil}
#+end_src
* Table improvements
I reduce the size of tables so that longer tables can still fit into an A4 (reduce font and make sans serif).
#+begin_src latex
\usepackage{floatrow}
\floatsetup[table]{font={footnotesize,sf},capposition=top}
#+end_src
* Possible Equation improvements
Make the equation numbers follow the chapter, not the whole thesis.
#+begin_src latex
\numberwithin{equation}{chapter}
#+end_src
* Minted
The minted package is used for highlighting source code.
#+begin_src latex
\usepackage{listings}
\usepackage{minted}
\setminted{autogobble=true,fontsize=\small,baselinestretch=0.8}
\setminted[python]{python3=true,tabsize=4}
\usemintedstyle{trac}
\lstset{abovecaptionskip=0}
\renewcommand{\listingscaption}{Code Snippet}
#+end_src
And reduce the distance between a minted listing and its caption.
#+begin_src latex
\AtEndEnvironment{listing}{\vspace{-16pt}}
#+end_src
* Scrhack
This package fixes some incompatibility errors between KOMAScript and other packages (namely minted). It has to be loaded at the end.
#+begin_src latex
\usepackage{scrhack}
#+end_src
* Background cover page
Add the cover image as background to the first page. Only do so when outputting a final version, because it significantly slows down the compilation times.
#+begin_src latex :tangle no
\usepackage[pages=some]{background}
\backgroundsetup{
scale=1,
color=black,
opacity=0.9,
angle=0,
contents={%
\includegraphics[width=\paperwidth,height=\paperheight]{/Users/user/Desktop/TectonicPlatesXVI.png}
}%
}
#+end_src