Reworked the header of each org-mode file

2019-05-14 16:59:02 +02:00 · 2019-05-14 16:59:02 +02:00 · 1fdc6df90f
commit 1fdc6df90f
parent 627859f026
18 changed files with 451 additions and 25 deletions
--- a/Marc/index.org
+++ b/Marc/index.org
@ -1,5 +1,33 @@
 #+TITLE: Measurements
-#+SETUPFILE: ../config.org
+:DRAWER:
+#+STARTUP: overview
+
+#+LANGUAGE: en
+#+EMAIL: dehaeze.thomas@gmail.com
+#+AUTHOR: Dehaeze Thomas
+
+#+HTML_LINK_HOME: ../index.html
+#+HTML_LINK_UP: ../index.html
+
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/htmlize.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/readtheorg.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/zenburn.css"/>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/bootstrap.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.stickytableheaders.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/readtheorg.js"></script>
+
+#+HTML_MATHJAX: align: center tagside: right font: TeX
+
+#+PROPERTY: header-args:matlab  :session *MATLAB*
+#+PROPERTY: header-args:matlab+ :comments org
+#+PROPERTY: header-args:matlab+ :results none
+#+PROPERTY: header-args:matlab+ :exports both
+#+PROPERTY: header-args:matlab+ :eval no-export
+#+PROPERTY: header-args:matlab+ :output-dir figs
+
+#+PROPERTY: header-args:shell  :eval no-export
+:END:

 * Experimental conditions
 - Measurement made in a metrology lab
--- a/Marc/index.org
+++ b/Marc/index.org
@ -1,5 +1,33 @@
 #+TITLE: Measurements
-#+SETUPFILE: ../config.org
+:DRAWER:
+#+STARTUP: overview
+
+#+LANGUAGE: en
+#+EMAIL: dehaeze.thomas@gmail.com
+#+AUTHOR: Dehaeze Thomas
+
+#+HTML_LINK_HOME: ../index.html
+#+HTML_LINK_UP: ../index.html
+
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/htmlize.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/readtheorg.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/zenburn.css"/>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/bootstrap.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.stickytableheaders.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/readtheorg.js"></script>
+
+#+HTML_MATHJAX: align: center tagside: right font: TeX
+
+#+PROPERTY: header-args:matlab  :session *MATLAB*
+#+PROPERTY: header-args:matlab+ :comments org
+#+PROPERTY: header-args:matlab+ :results none
+#+PROPERTY: header-args:matlab+ :exports both
+#+PROPERTY: header-args:matlab+ :eval no-export
+#+PROPERTY: header-args:matlab+ :output-dir figs
+
+#+PROPERTY: header-args:shell  :eval no-export
+:END:

 * Experimental conditions
 - The granite is not glued to the floor
--- a/Marc/index.org
+++ b/Marc/index.org
@ -1,5 +1,33 @@
 #+TITLE: Measurements
-#+SETUPFILE: ../config.org
+:DRAWER:
+#+STARTUP: overview
+
+#+LANGUAGE: en
+#+EMAIL: dehaeze.thomas@gmail.com
+#+AUTHOR: Dehaeze Thomas
+
+#+HTML_LINK_HOME: ../index.html
+#+HTML_LINK_UP: ../index.html
+
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/htmlize.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/readtheorg.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/zenburn.css"/>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/bootstrap.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.stickytableheaders.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/readtheorg.js"></script>
+
+#+HTML_MATHJAX: align: center tagside: right font: TeX
+
+#+PROPERTY: header-args:matlab  :session *MATLAB*
+#+PROPERTY: header-args:matlab+ :comments org
+#+PROPERTY: header-args:matlab+ :results none
+#+PROPERTY: header-args:matlab+ :exports both
+#+PROPERTY: header-args:matlab+ :eval no-export
+#+PROPERTY: header-args:matlab+ :output-dir figs
+
+#+PROPERTY: header-args:shell  :eval no-export
+:END:

 * Experimental conditions
 - Measurement made in the experiment hutch
--- a/Marc/index.org
+++ b/Marc/index.org
@ -1,5 +1,33 @@
 #+TITLE: Measurement Analysis
-#+SETUPFILE: ../config.org
+:DRAWER:
+#+STARTUP: overview
+
+#+LANGUAGE: en
+#+EMAIL: dehaeze.thomas@gmail.com
+#+AUTHOR: Dehaeze Thomas
+
+#+HTML_LINK_HOME: ../index.html
+#+HTML_LINK_UP: ../index.html
+
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/htmlize.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/readtheorg.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/zenburn.css"/>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/bootstrap.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.stickytableheaders.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/readtheorg.js"></script>
+
+#+HTML_MATHJAX: align: center tagside: right font: TeX
+
+#+PROPERTY: header-args:matlab  :session *MATLAB*
+#+PROPERTY: header-args:matlab+ :comments org
+#+PROPERTY: header-args:matlab+ :results none
+#+PROPERTY: header-args:matlab+ :exports both
+#+PROPERTY: header-args:matlab+ :eval no-export
+#+PROPERTY: header-args:matlab+ :output-dir figs
+
+#+PROPERTY: header-args:shell  :eval no-export
+:END:

 * Matlab Init                                               :noexport:ignore:
 #+begin_src matlab :tangle no :exports none :results silent :noweb yes :var current_dir=(file-name-directory buffer-file-name)
--- a/actuators-sensors/index.org
+++ b/actuators-sensors/index.org
@ -1,5 +1,33 @@
 #+TITLE: Equipment
-#+SETUPFILE: ../config.org
+:DRAWER:
+#+STARTUP: overview
+
+#+LANGUAGE: en
+#+EMAIL: dehaeze.thomas@gmail.com
+#+AUTHOR: Dehaeze Thomas
+
+#+HTML_LINK_HOME: ../index.html
+#+HTML_LINK_UP: ../index.html
+
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/htmlize.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/readtheorg.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/zenburn.css"/>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/bootstrap.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.stickytableheaders.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/readtheorg.js"></script>
+
+#+HTML_MATHJAX: align: center tagside: right font: TeX
+
+#+PROPERTY: header-args:matlab  :session *MATLAB*
+#+PROPERTY: header-args:matlab+ :comments org
+#+PROPERTY: header-args:matlab+ :results none
+#+PROPERTY: header-args:matlab+ :exports both
+#+PROPERTY: header-args:matlab+ :eval no-export
+#+PROPERTY: header-args:matlab+ :output-dir figs
+
+#+PROPERTY: header-args:shell  :eval no-export
+:END:

 * Sensors
 ** Accelerometers
--- a/disturbance-control-system/index.org
+++ b/disturbance-control-system/index.org
@ -41,6 +41,7 @@ For all the measurements shown here:
  :END:
  <<sec:effect_control_all>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ matlab/effect_control_all.m -nt data/effect_control_all.zip ]; then
    cp matlab/effect_control_all.m effect_control_all.m;
@ -366,6 +367,7 @@ First, we compute the Power Spectral Density of the signals coming from the Geop
  :END:
  <<sec:effect_control_one>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ matlab/effect_control_one.m -nt data/effect_control_one.zip ]; then
    cp matlab/effect_control_one.m effect_control_one.m;
@ -634,6 +636,7 @@ And we compare the Amplitude Spectral Densities (figures [[fig:psd_marble_comp_l
  :END:
  <<sec:effect_symetrie_driver>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ matlab/effect_symetrie_driver.m -nt data/effect_symetrie_driver.zip ]; then
    cp matlab/effect_symetrie_driver.m effect_symetrie_driver.m;
@ -784,6 +787,7 @@ First, we compute the Power Spectral Density of the signals coming from the Geop
  :END:
  <<sec:tf_stages_geophone>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ matlab/tf_stages_geophone.m -nt data/tf_stages_geophone.zip ]; then
    cp matlab/tf_stages_geophone.m tf_stages_geophone.m;
--- a/disturbance-measurement/index.org
+++ b/disturbance-measurement/index.org
@ -1,5 +1,33 @@
 #+TITLE:Measurement of the sample vibrations when rotating the Spindle
-#+SETUPFILE: ../config.org
+:DRAWER:
+#+STARTUP: overview
+
+#+LANGUAGE: en
+#+EMAIL: dehaeze.thomas@gmail.com
+#+AUTHOR: Dehaeze Thomas
+
+#+HTML_LINK_HOME: ../index.html
+#+HTML_LINK_UP: ../index.html
+
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/htmlize.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/readtheorg.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/zenburn.css"/>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/bootstrap.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.stickytableheaders.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/readtheorg.js"></script>
+
+#+HTML_MATHJAX: align: center tagside: right font: TeX
+
+#+PROPERTY: header-args:matlab  :session *MATLAB*
+#+PROPERTY: header-args:matlab+ :comments org
+#+PROPERTY: header-args:matlab+ :results none
+#+PROPERTY: header-args:matlab+ :exports both
+#+PROPERTY: header-args:matlab+ :eval no-export
+#+PROPERTY: header-args:matlab+ :output-dir figs
+
+#+PROPERTY: header-args:shell  :eval no-export
+:END:

 * Experimental Setup

--- a/disturbance-sr-rz/index.org
+++ b/disturbance-sr-rz/index.org
@ -78,6 +78,7 @@ A movie showing the experiment is shown on figure [[fig:exp_sl_sp_gif]].
  :END:
  <<sec:spindle_slip_ring_vibrations>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ matlab/spindle_slip_ring_vibrations.m -nt data/spindle_slip_ring_vibrations.zip ]; then
    cp matlab/spindle_slip_ring_vibrations.m spindle_slip_ring_vibrations.m;
--- a/disturbance-ty-sr/index.org
+++ b/disturbance-ty-sr/index.org
@ -1,4 +1,4 @@
-#+TITLE:Vibrations induced by both the translation stage and the slip-ring
+#+TITLE:Vibrations induced by simultaneous scans of the translation stage and of the slip-ring
 :DRAWER:
 #+STARTUP: overview

@ -30,19 +30,111 @@
 :END:

 * Measurement description
-All the stages are OFF except Ty and Slip-Ring.
+** Setup                                                             :ignore:
+*Setup*:
+All the stages are OFF except the translation stage and the Slip-Ring.

-Each of the signal is amplified by voltage amplifier:
- 40db!!!
- AC
- 1kHz
+Each of the signal is amplified by voltage amplifiers with the following settings:
+- Gain: 40dB
+- AC/DC option: AC
+- Low pass filter: 1kHz

-col1: marble
-col2: sample
+The slip-ring is rotating at 60rpm. At the same time, scans with the translation stage are done at 1Hz with an amplitude of 600000cnt (= 3mm).

-Rotating the slip-ring at 60rpm and scans with the Ty at 1Hz.
-Everything on the Z direction
+Two geophones are used to measure the motion in the vertical direction of the marble and of the sample.

- meas 50: Slip-Ring at 1Hz, Ty OFF
- meas 51: Slip-Ring at 1Hz, Ty ON (The current and cnt error of Ty is also registered)
- meas 52: Slip-Ring at 1Hz, Ty 1Hz 600000cnt
+** Goal                                                              :ignore:
+*Goal*:
+- The goal is to estimate the vibrations induced by the simultaneous scans of the spindle (here the slip-ring is used as the spindle is not fully functional yet) and of the translation stage
+
+** Measurements                                                      :ignore:
+*Measurements*:
+
+Three measurements are done:
+| Measurement File   | Description                                                                  |
+|--------------------+------------------------------------------------------------------------------|
+| =mat/data_050.mat= | Slip-Ring at 1Hz, Ty OFF                                                     |
+| =mat/data_051.mat= | Slip-Ring at 1Hz, Ty ON (The current and cnt error of Ty is also registered) |
+| =mat/data_052.mat= | Slip-Ring at 1Hz, Ty 1Hz 600000cnt                                           |
+
+Each of the measurement =mat= file contains one =data= array with 3 columns:
+| Column number | Description                     |
+|---------------+---------------------------------|
+|             1 | Geophone on the marble          |
+|             2 | Geophone at the sample location |
+|             3 | Time                            |
+
+* Data Analysis
+  :PROPERTIES:
+  :header-args:matlab+: :tangle matlab/disturbance_ty_sr.m
+  :header-args:matlab+: :comments org :mkdirp yes
+  :END:
+  <<sec:disturbance_ty_sr>>
+
+** ZIP file containing the data and matlab files                     :ignore:
+#+begin_src bash :exports none :results none
+  if [ matlab/disturbance_ty_sr.m -nt data/disturbance_ty_sr.zip ]; then
+    cp matlab/disturbance_ty_sr.m disturbance_ty_sr.m;
+    zip data/disturbance_ty_sr \
+        mat/data_050.mat \
+        mat/data_051.mat \
+        mat/data_052.mat \
+        mat/Ty-when-Rz-1Hz-and-Ty-1Hz.csv \
+        mat/Ty-when-Rz-1Hz.csv \
+        disturbance_ty_sr.m
+    rm disturbance_ty_sr.m;
+  fi
+#+end_src
+
+#+begin_note
+  All the files (data and Matlab scripts) are accessible [[file:data/disturbance_ty_sr.zip][here]].
+#+end_note
+
+** Matlab Init                                              :noexport:ignore:
+#+begin_src matlab :tangle no :exports none :results silent :noweb yes :var current_dir=(file-name-directory buffer-file-name)
+  <<matlab-dir>>
+#+end_src
+
+#+begin_src matlab :exports none :results silent :noweb yes
+  <<matlab-init>>
+#+end_src
+
+** Load data
+#+begin_src matlab
+  ty_off = load('mat/data_050.mat', 'data'); ty_off = ty_off.data;
+  ty_on = load('mat/data_051.mat', 'data'); ty_on  = ty_on.data;
+  ty_1hz = load('mat/data_052.mat', 'data'); ty_1hz = ty_1hz.data;
+#+end_src
+
+** Time domain plots
+#+begin_src matlab
+  figure;
+  hold on;
+  plot(ty_1hz(:, 3), ty_1hz(:, 1), 'DisplayName', 'Marble - Z');
+  plot(ty_on(:, 3),  ty_on(:, 1),  'DisplayName', 'Marble - Z');
+  plot(ty_off(:, 3), ty_off(:, 1), 'DisplayName', 'Marble - Z');
+  hold off;
+  xlabel('Time [s]'); ylabel('Voltage [V]');
+  xlim([0, 100]); ylim([-5, 5]);
+  legend('Location', 'northeast');
+#+end_src
+
+#+begin_src matlab
+  xlim([0, 1]);
+#+end_src
+
+#+begin_src matlab
+  figure;
+  hold on;
+  plot(ty_1hz(:, 3), ty_1hz(:, 2), 'DisplayName', 'Marble - Z');
+  plot(ty_on(:, 3),  ty_on(:, 2),  'DisplayName', 'Marble - Z');
+  plot(ty_off(:, 3), ty_off(:, 2), 'DisplayName', 'Marble - Z');
+  hold off;
+  xlabel('Time [s]'); ylabel('Voltage [V]');
+  xlim([0, 100]); ylim([-5, 5]);
+  legend('Location', 'northeast');
+#+end_src
+
+#+begin_src matlab
+  xlim([0, 1]);
+#+end_src
--- a/disturbance-ty/index.org
+++ b/disturbance-ty/index.org
@ -108,6 +108,7 @@ Each of the measurement =mat= file contains one =data= array with 3 columns:
 #+begin_src matlab :exports none :results silent :noweb yes
 <<matlab-init>>
 #+end_src
+
 ** Load data
 #+begin_src matlab
  z_ty = load('mat/data_040.mat', 'data'); z_ty = z_ty.data;
--- a/equipment/equipment.org
+++ b/equipment/equipment.org
@ -1,5 +1,33 @@
 #+TITLE: Equipment used to make the measurements
-#+SETUPFILE: ../config.org
+:DRAWER:
+#+STARTUP: overview
+
+#+LANGUAGE: en
+#+EMAIL: dehaeze.thomas@gmail.com
+#+AUTHOR: Dehaeze Thomas
+
+#+HTML_LINK_HOME: ../index.html
+#+HTML_LINK_UP: ../index.html
+
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/htmlize.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/readtheorg.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/zenburn.css"/>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/bootstrap.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.stickytableheaders.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/readtheorg.js"></script>
+
+#+HTML_MATHJAX: align: center tagside: right font: TeX
+
+#+PROPERTY: header-args:matlab  :session *MATLAB*
+#+PROPERTY: header-args:matlab+ :comments org
+#+PROPERTY: header-args:matlab+ :results none
+#+PROPERTY: header-args:matlab+ :exports both
+#+PROPERTY: header-args:matlab+ :eval no-export
+#+PROPERTY: header-args:matlab+ :output-dir figs
+
+#+PROPERTY: header-args:shell  :eval no-export
+:END:

 * Geophone
 L22
--- a/ground-motion/index.org
+++ b/ground-motion/index.org
@ -1,5 +1,33 @@
 #+TITLE: Ground Motion Measurements
-#+SETUPFILE: ../config.org
+:DRAWER:
+#+STARTUP: overview
+
+#+LANGUAGE: en
+#+EMAIL: dehaeze.thomas@gmail.com
+#+AUTHOR: Dehaeze Thomas
+
+#+HTML_LINK_HOME: ../index.html
+#+HTML_LINK_UP: ../index.html
+
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/htmlize.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/readtheorg.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/zenburn.css"/>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/bootstrap.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.stickytableheaders.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/readtheorg.js"></script>
+
+#+HTML_MATHJAX: align: center tagside: right font: TeX
+
+#+PROPERTY: header-args:matlab  :session *MATLAB*
+#+PROPERTY: header-args:matlab+ :comments org
+#+PROPERTY: header-args:matlab+ :results none
+#+PROPERTY: header-args:matlab+ :exports both
+#+PROPERTY: header-args:matlab+ :eval no-export
+#+PROPERTY: header-args:matlab+ :output-dir figs
+
+#+PROPERTY: header-args:shell  :eval no-export
+:END:

 * Experimental Setup
 The goal here is to compare the ground motion at the location of the micro-station (ID31 beamline at ESRF) with other measurements of the ground motion.
@ -27,6 +55,7 @@ On figure [[fig:ground_motion_measurements]] is an overview of multiple measurem
  :END:
  <<sec:ground_meas_id31>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ matlab/ground_meas_id31.m -nt data/ground_meas_id31.zip ]; then
    cp matlab/ground_meas_id31.m ground_meas_id31.m;
@ -261,6 +290,7 @@ And we compare all the measurements (figure [[fig:ground_motion_compare]]).
  plot(id09_f, id09_pxx, 'DisplayName', 'ID09');
  plot(cern_f, cern_pxx, 'DisplayName', 'CERN');
  plot(f, ((sqrt(px_dc).*scaling)./(2*pi*f)).^2, 'k', 'DisplayName', 'ID31');
+  plot(f, px_disp);
  hold off;
  set(gca, 'XScale', 'log'); set(gca, 'YScale', 'log');
  xlabel('Frequency [Hz]'); ylabel('PSD [$m^2/Hz$]');
--- a/huddle-test-geophones/index.org
+++ b/huddle-test-geophones/index.org
@ -1,5 +1,33 @@
 #+TITLE:Huddle Test of the L22 Geophones
-#+SETUPFILE: ../config.org
+:DRAWER:
+#+STARTUP: overview
+
+#+LANGUAGE: en
+#+EMAIL: dehaeze.thomas@gmail.com
+#+AUTHOR: Dehaeze Thomas
+
+#+HTML_LINK_HOME: ../index.html
+#+HTML_LINK_UP: ../index.html
+
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/htmlize.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/readtheorg.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/zenburn.css"/>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/bootstrap.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.stickytableheaders.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/readtheorg.js"></script>
+
+#+HTML_MATHJAX: align: center tagside: right font: TeX
+
+#+PROPERTY: header-args:matlab  :session *MATLAB*
+#+PROPERTY: header-args:matlab+ :comments org
+#+PROPERTY: header-args:matlab+ :results none
+#+PROPERTY: header-args:matlab+ :exports both
+#+PROPERTY: header-args:matlab+ :eval no-export
+#+PROPERTY: header-args:matlab+ :output-dir figs
+
+#+PROPERTY: header-args:shell  :eval no-export
+:END:

 * Experimental Setup
 Two L22 geophones are used.
@ -28,6 +56,7 @@ The voltage amplifiers includes:
  :END:
  <<sec:huddle_test_signal_processing>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ matlab/huddle_test_signal_processing.m -nt data/huddle_test_signal_processing.zip ]; then
    cp matlab/huddle_test_signal_processing.m huddle_test_signal_processing.m;
--- a/index.org
+++ b/index.org
@ -131,8 +131,10 @@ The goal is to estimate all the error motions induced by the Spindle

 *** Results

-* Other measurements
+* Other measurements - Instrumentation
 - [[file:huddle-test-geophones/index.org][Huddle Test - Geophones]]
+- [[file:instrumentation/index.org][Measurement on the instrumentation]]
+
 - [[file:disturbance-measurement/index.org][Disturbance Measurement]]
 - [[file:slip-ring-test/index.org][Slip Ring - Noise measurement]]
 - [[file:static-measurements/index.org][Control System Measurement]]
@ -140,3 +142,4 @@ The goal is to estimate all the error motions induced by the Spindle
 * Ressources
 - [[file:actuators-sensors/index.org][Actuators and Sensors]]
 - [[file:equipment/equipment.org][Equipment used for the measurements]]
+- [[file:src/index.org][Matlab functions used for the data analysis]]
--- a/instrumentation/index.org
+++ b/instrumentation/index.org
@ -1,5 +1,33 @@
 #+TITLE: Measurements on the instrumentation
-#+SETUPFILE: ../config.org
+:DRAWER:
+#+STARTUP: overview
+
+#+LANGUAGE: en
+#+EMAIL: dehaeze.thomas@gmail.com
+#+AUTHOR: Dehaeze Thomas
+
+#+HTML_LINK_HOME: ../index.html
+#+HTML_LINK_UP: ../index.html
+
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/htmlize.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/readtheorg.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/zenburn.css"/>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/bootstrap.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.stickytableheaders.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/readtheorg.js"></script>
+
+#+HTML_MATHJAX: align: center tagside: right font: TeX
+
+#+PROPERTY: header-args:matlab  :session *MATLAB*
+#+PROPERTY: header-args:matlab+ :comments org
+#+PROPERTY: header-args:matlab+ :results none
+#+PROPERTY: header-args:matlab+ :exports both
+#+PROPERTY: header-args:matlab+ :eval no-export
+#+PROPERTY: header-args:matlab+ :output-dir figs
+
+#+PROPERTY: header-args:shell  :eval no-export
+:END:

 * Measure of the noise of the Voltage Amplifier
  :PROPERTIES:
@ -8,6 +36,7 @@
  :END:
  <<sec:meas_volt_amp>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ meas_volt_amp.m -nt data/meas_volt_amp.zip ]; then
    zip data/meas_volt_amp \
@ -150,6 +179,7 @@ Finally, the ASD is shown on figure [[fig:ampli_noise_psd]].
  :END:
  <<sec:meas_noise_ac_dc>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ meas_noise_ac_dc.m -nt data/meas_noise_ac_dc.zip ]; then
    zip data/meas_noise_ac_dc \
@ -294,6 +324,7 @@ The ASD of the signals are compare on figure [[fig:ac_dc_option_asd]].
  :END:
  <<sec:low_pass_filter_measurements>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ low_pass_filter_measurements.m -nt data/low_pass_filter_measurements.zip ]; then
    zip data/low_pass_filter_measurements \
--- a/slip-ring-electrical-noise/index.org
+++ b/slip-ring-electrical-noise/index.org
@ -56,6 +56,7 @@ Then, we determine is the slip-ring add some noise to the signal when it is turn
  :END:
  <<sec:meas_slip_ring_geophone>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ matlab/meas_slip_ring_geophone.m -nt data/meas_slip_ring_geophone.zip ]; then
    cp matlab/meas_slip_ring_geophone.m meas_slip_ring_geophone.m;
@ -201,6 +202,7 @@ We then compute the Power Spectral Density of the two signals and we compare the
  :END:
  <<sec:meas_sr_geophone>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ matlab/meas_sr_geophone.m -nt data/meas_sr_geophone.zip ]; then
    cp matlab/meas_sr_geophone.m meas_sr_geophone.m;
@ -602,6 +604,7 @@ Additionnal LPF is added before the voltage amplifiers
  :END:
  <<sec:meas_effect_sr>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ matlab/meas_effect_sr.m -nt data/meas_effect_sr.zip ]; then
    cp matlab/meas_effect_sr.m meas_effect_sr.m;
@ -756,6 +759,7 @@ We now look at the difference between the signal directly measured by the ADC an
  :END:
  <<sec:meas_slip_ring>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ matlab/meas_slip_ring.m -nt data/meas_slip_ring.zip ]; then
    cp matlab/meas_slip_ring.m meas_slip_ring.m;
@ -948,6 +952,7 @@ And we plot the ASD of the measured signals (figure [[fig:sr_psd_compare]]);
  :END:
  <<sec:meas_slip_ring_lpf>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ matlab/meas_slip_ring_lpf.m -nt data/meas_slip_ring_lpf.zip ]; then
    cp matlab/meas_slip_ring_lpf.m meas_slip_ring_lpf.m;
--- a/static-spindle/index.org
+++ b/static-spindle/index.org
@ -1,5 +1,33 @@
 #+TITLE: Spindle Analysis
-#+SETUPFILE: ../config.org
+:DRAWER:
+#+STARTUP: overview
+
+#+LANGUAGE: en
+#+EMAIL: dehaeze.thomas@gmail.com
+#+AUTHOR: Dehaeze Thomas
+
+#+HTML_LINK_HOME: ../index.html
+#+HTML_LINK_UP: ../index.html
+
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/htmlize.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/readtheorg.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/zenburn.css"/>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/bootstrap.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/jquery.stickytableheaders.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="../js/readtheorg.js"></script>
+
+#+HTML_MATHJAX: align: center tagside: right font: TeX
+
+#+PROPERTY: header-args:matlab  :session *MATLAB*
+#+PROPERTY: header-args:matlab+ :comments org
+#+PROPERTY: header-args:matlab+ :results none
+#+PROPERTY: header-args:matlab+ :exports both
+#+PROPERTY: header-args:matlab+ :eval no-export
+#+PROPERTY: header-args:matlab+ :output-dir figs
+
+#+PROPERTY: header-args:shell  :eval no-export
+:END:

 The report made by the PEL is accessible [[file:documents/Spindle_report_test.pdf][here]].

@ -15,6 +43,7 @@ The report made by the PEL is accessible [[file:documents/Spindle_report_test.pd
  :END:
  <<sec:spindle_data_processing>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ matlab/spindle_data_processing.m -nt data/spindle_data_processing.zip ]; then
    cp matlab/spindle_data_processing.m spindle_data_processing.m;
@ -142,6 +171,7 @@ The report made by the PEL is accessible [[file:documents/Spindle_report_test.pd
  :END:
  <<sec:spindle_time_domain>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ matlab/spindle_time_domain.m -nt data/spindle_time_domain.zip ]; then
    cp matlab/spindle_time_domain.m spindle_time_domain.m;
@ -315,6 +345,7 @@ The data is split into its Synchronous and Asynchronous part (figure [[fig:spind
  :END:
  <<sec:spindle_model>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ matlab/spindle_model.m -nt data/spindle_model.zip ]; then
    cp matlab/spindle_model.m spindle_model.m;
@ -474,6 +505,7 @@ The transfer function from a disturbance force $f$ to the measured displacement
  :END:
  <<sec:spindle_psd>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ matlab/spindle_psd.m -nt data/spindle_psd.zip ]; then
    cp matlab/spindle_psd.m spindle_psd.m;
--- a/static-to-dynamic/index.org
+++ b/static-to-dynamic/index.org
@ -40,6 +40,7 @@ The report by H-P van der Kleij on the static measurement of the ID31 station is
  :END:
  <<sec:static_ty>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ matlab/static_ty.m -nt data/static_ty.zip ]; then
    cp matlab/static_ty.m static_ty.m;
@ -268,6 +269,7 @@ The result is shown on figure [[fig:psd_tyz]].
  :END:
  <<sec:spindle_static>>

+** ZIP file containing the data and matlab files                     :ignore:
 #+begin_src bash :exports none :results none
  if [ matlab/spindle_static.m -nt data/spindle_static.zip ]; then
    cp matlab/spindle_static.m spindle_static.m;