Huge Update - Change all ressources directory
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@ -82,7 +82,8 @@ Documentation:
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| C-c C-v h | org-babel-describe-bindings |
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| C-c C-v x | org-babel-do-key-sequence-in-edit-buffer |
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* Personal Information
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* Basic Configuration
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** Personal Information
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#+begin_src emacs-lisp
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;; These are used for a number of things, particularly for GPG configuration,
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;; some email clients, file templates and snippets.
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@ -90,7 +91,7 @@ Documentation:
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user-mail-address "dehaeze.thomas@gmail.com")
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#+end_src
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* Doom Config
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** Doom Config
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#+begin_src emacs-lisp
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(setq doom-font (font-spec :family "Hack Nerd Font Mono" :size 12 :weight 'semi-light)
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doom-variable-pitch-font (font-spec :family "Hack Nerd Font Mono")
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@ -106,7 +107,7 @@ Documentation:
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(setq display-line-numbers-type t)
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#+end_src
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* Evil
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** Evil
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#+begin_src emacs-lisp
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(after! evil
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(map! :m "-" #'dired-jump))
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@ -125,7 +126,7 @@ Make horizontal movement cross lines
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(setq-default evil-cross-lines t)
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#+end_src
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* Which Key
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** Which Key
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#+begin_src emacs-lisp
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(after! which-key
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(setq which-key-idle-delay 0.5
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@ -133,7 +134,6 @@ Make horizontal movement cross lines
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which-key-sort-order 'which-key-key-order-alpha))
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#+end_src
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* Basic
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** Visual
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Automatic line wrap.
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#+begin_src emacs-lisp
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@ -181,13 +181,27 @@ Turn off auto-fill mode that add line breaks.
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"C-i" #'better-jumper-jump-forward))
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#+end_src
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* Magit
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** Magit
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#+begin_src emacs-lisp
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(setenv "GIT_ASKPASS" "git-gui--askpass")
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(setq magit-diff-refine-hunk 'all)
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#+end_src
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** PDF-Tools
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#+begin_src emacs-lisp
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(use-package! pdf-tools
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:config
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(add-hook 'pdf-view-mode-hook (lambda() (linum-mode -1)))
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)
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#+end_src
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** Yassnippets
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#+begin_src emacs-lisp
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(push "~/.config/doom/snippets" yas-snippet-dirs)
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(yas-global-mode 1)
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#+end_src
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* Org Mode
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- http://cachestocaches.com/2016/9/my-workflow-org-agenda/
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- http://doc.norang.ca/org-mode.html#TodoKeywords
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@ -239,9 +253,9 @@ Display the real size of images and not the one set with =attr_latex: :width \li
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(map! :map org-mode-map "C-c l" 'org-store-link)
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(setq org-link-abbrev-alist
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'(("bib" . "~/Cloud/thesis/ressources/references.bib::%s")
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("notes" . "~/Cloud/thesis/ressources/notes/notes.org::#%s")
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("papers" . "~/Cloud/thesis/ressources/pdfs/%s.pdf")))
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'(("bib" . "~/Cloud/brain/references.bib::%s")
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("notes" . "~/Cloud/brain/%s.org")
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("papers" . "~/Cloud/pdfs/%s.pdf")))
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)
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#+end_src
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@ -296,8 +310,9 @@ Display the real size of images and not the one set with =attr_latex: :width \li
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)
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#+end_src
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** Archive subtrees under the same hierarchy as original in the archive files
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** Org Archive
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https://gist.github.com/Fuco1/e86fb5e0a5bb71ceafccedb5ca22fcfb
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Archive subtrees under the same hierarchy as original in the archive files
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#+begin_src emacs-lisp
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(after! org
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@ -347,7 +362,7 @@ https://gist.github.com/Fuco1/e86fb5e0a5bb71ceafccedb5ca22fcfb
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#+end_src
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** Org Agenda
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*** General configuration
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General configuration
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#+begin_src emacs-lisp
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(after! org
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(map! :map org-mode-map "C-c a" 'org-agenda)
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@ -380,9 +395,7 @@ https://gist.github.com/Fuco1/e86fb5e0a5bb71ceafccedb5ca22fcfb
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)
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#+end_src
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*** Org Agenda Custom Views
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https://blog.aaronbieber.com/2016/09/24/an-agenda-for-life-with-org-mode.html
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Org Agenda Custom Views
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#+begin_src emacs-lisp
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(after! org-agenda
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(defun tdh-org-agenda-skip-scheduled ()
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@ -442,7 +455,7 @@ https://blog.aaronbieber.com/2016/09/24/an-agenda-for-life-with-org-mode.html
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(level 1)
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(not (tags "article" "inproceedings" "techreport" "inbook" "book" "phdthesis")))
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((org-ql-block-header "Other Things"))))
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((org-agenda-files '("~/Cloud/thesis/ressources/notes/"))))
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((org-agenda-files '("~/Cloud/brain/"))))
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("r" "Articles and Books to read"
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((org-ql-block '(and (todo "READ")
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(level 1)
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@ -460,7 +473,7 @@ https://blog.aaronbieber.com/2016/09/24/an-agenda-for-life-with-org-mode.html
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(level 1)
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(not (tags "article" "inproceedings" "techreport" "inbook" "book" "phdthesis")))
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((org-ql-block-header "Other Things to Read"))))
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((org-agenda-files '("~/Cloud/thesis/ressources/notes/")))))
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((org-agenda-files '("~/Cloud/brain/")))))
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)
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)
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#+end_src
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@ -539,51 +552,51 @@ Documentation:
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#+begin_src emacs-lisp
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(after! org
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(setq org-capture-templates
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(quote (("t" ; key
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"todo" ; name
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entry ; type
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(file+headline "~/Cloud/org/work-notebook.org" "Inbox") ; target
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"** TODO %?\n%U\n" ; template
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)
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("M" ; key
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"Meeting" ; name
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entry ; type
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(file+headline "~/Cloud/org/work-notebook.org" "Meetings") ; target
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"** %?\n%(org-insert-time-stamp (org-read-date nil t \"+0d\"))\n" ; template
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)
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("m" ; key
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"mail" ; name
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entry ; type
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(file+headline "~/Cloud/org/work-notebook.org" "Mails") ; target
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"** TODO [#A] %?\nSCHEDULED: %(org-insert-time-stamp (org-read-date nil t \"+0d\"))\n%a\n" ; template
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)
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("pm"
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"Org-Protocol Mail"
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entry
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(file+headline "~/Cloud/org/work-notebook.org" "Mails")
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"* MAIL %:description [[message:%:link][link]]\nSCHEDULED: %(org-insert-time-stamp (org-read-date nil t \"+0d\"))\n\n"
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:immediate-finish t
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)
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("pu"
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"Org-Protocol Url"
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entry
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(file+headline "~/Cloud/org/work-notebook.org" "Inbox")
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"* [[%:link][%:description]]\nCaptured On: %U\n\n"
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:immediate-finish t
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)
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("pt"
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"Org-Protocol text"
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entry
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(file+headline "~/Cloud/org/work-notebook.org" "Inbox")
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"* %:description\nSource: %:link\nCaptured On: %U\n\n#+BEGIN_QUOTE\n%i\n#+END_QUOTE\n\n"
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:immediate-finish t
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)
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)))
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)
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(quote (("t" ; key
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"todo" ; name
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entry ; type
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(file+headline "~/Cloud/org/work-notebook.org" "Inbox") ; target
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"** TODO %?\n%U\n" ; template
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)
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("M" ; key
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"Meeting" ; name
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entry ; type
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(file+headline "~/Cloud/org/work-notebook.org" "Meetings") ; target
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"** %?\n%(org-insert-time-stamp (org-read-date nil t \"+0d\"))\n" ; template
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)
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("m" ; key
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"mail" ; name
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entry ; type
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(file+headline "~/Cloud/org/work-notebook.org" "Mails") ; target
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"** TODO [#A] %?\nSCHEDULED: %(org-insert-time-stamp (org-read-date nil t \"+0d\"))\n%a\n" ; template
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)
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("pm"
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"Org-Protocol Mail"
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entry
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(file+headline "~/Cloud/org/work-notebook.org" "Mails")
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"* MAIL %:description [[message:%:link][link]]\nSCHEDULED: %(org-insert-time-stamp (org-read-date nil t \"+0d\"))\n\n"
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:immediate-finish t
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)
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("pu"
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"Org-Protocol Url"
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entry
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(file+headline "~/Cloud/org/work-notebook.org" "Inbox")
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"* [[%:link][%:description]]\nCaptured On: %U\n\n"
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:immediate-finish t
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)
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("pt"
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"Org-Protocol text"
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entry
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(file+headline "~/Cloud/org/work-notebook.org" "Inbox")
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"* %:description\nSource: %:link\nCaptured On: %U\n\n#+BEGIN_QUOTE\n%i\n#+END_QUOTE\n\n"
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:immediate-finish t
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)
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)))
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)
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#+end_src
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** Org Export
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*** Basic
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Basic configuration:
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#+begin_src emacs-lisp
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(after! org
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;; How many levels of headline to export
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@ -597,7 +610,7 @@ Documentation:
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)
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#+end_src
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*** Defaults
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Some defaults:
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#+begin_src emacs-lisp
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(after! org
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(setq org-export-with-author t)
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@ -610,7 +623,7 @@ Documentation:
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)
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#+end_src
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*** Do not export headline with the =:ignore:= tag
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Do not export headline with the =:ignore:= tag:
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#+begin_src emacs-lisp
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;; Used to not export headings with :ignore: tag
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(after! org
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@ -1167,127 +1180,6 @@ https://www.reddit.com/r/orgmode/comments/7u2n0h/tip_for_defining_latex_macros_f
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#+end_src
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** Org Ref
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Ressources:
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- https://github.com/tmalsburg/helm-bibtex
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- https://github.com/jkitchin/org-ref
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- https://www.reddit.com/r/emacs/comments/4gudyw/help_me_with_my_orgmode_workflow_for_notetaking/
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Nice Functions:
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- =org-ref-insert-ref-link=
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- =org-ref-helm-insert-cite-link=
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- =org-ref-list-of-figures=
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- =org-ref-find-bad-citations=
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- =org-ref-clean-bibtex-entry=
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#+begin_src emacs-lisp
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(use-package! org-ref
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:after org
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:init
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:config
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;; Folder where the notes files are located (or file if just one Note file)
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(setq org-ref-notes-directory "~/Cloud/thesis/ressources/notes")
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(setq org-ref-bibliography-notes "~/Cloud/thesis/ressources/notes")
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;; Bibliography File
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(setq reftex-default-bibliography '("~/Cloud/thesis/ressources/references.bib"))
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(setq org-ref-default-bibliography '("~/Cloud/thesis/ressources/references.bib"))
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;; Folder where all the pdf are located
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(setq org-ref-pdf-directory "~/Cloud/thesis/ressources/pdfs")
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;; Tell org-ref to let helm-bibtex find notes for it
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(setq org-ref-notes-function
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(lambda (thekey)
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(let ((bibtex-completion-bibliography (org-ref-find-bibliography)))
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(bibtex-completion-edit-notes
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(list (car (org-ref-get-bibtex-key-and-file thekey)))))))
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;; Problem with speed: don't display broken links
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(setq org-ref-show-broken-links t)
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;; Display information on the citation
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(setq org-ref-show-citation-on-enter t)
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(add-to-list 'org-ref-helm-user-candidates
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'("Open pdf in Zathura" . (lambda () (call-process "zathura" nil 0 nil (concat
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(file-name-as-directory org-ref-pdf-directory)
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(car (org-ref-get-bibtex-key-and-file))
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".pdf"))))
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t)
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(add-to-list 'org-ref-helm-user-candidates
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'("Drag and Drop" . (lambda () (call-process "/bin/bash" nil 0 nil "-c" (concat
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"dragon-drag-and-drop "
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(file-name-as-directory org-ref-pdf-directory)
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(car (org-ref-get-bibtex-key-and-file))
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".pdf"))))
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t)
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(map!
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:map org-mode-map
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(:desc "Insert Link"
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:ni "C-c i" #'org-ref-insert-ref-link))
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)
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#+end_src
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#+begin_src emacs-lisp
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(defun tdh-org-ref-open-pdf-at-point ()
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"Open the pdf in external program for bibtex key under point if it exists."
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(interactive)
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(let* ((results (org-ref-get-bibtex-key-and-file))
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(key (car results))
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(pdf-file (funcall org-ref-get-pdf-filename-function key)))
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(if (file-exists-p pdf-file)
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(call-process "zathura" nil 0 nil pdf-file)
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(message "no pdf found for %s" key))))
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#+end_src
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** Org Noter
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- https://github.com/weirdNox/org-noter
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#+begin_src emacs-lisp
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(use-package! org-noter
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:defer t
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:after (:any org pdf-view)
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:config
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(setq org-noter-always-create-frame nil)
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(setq org-noter-kill-frame-at-session-end nil)
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;; Fraction of the frame that the document window will occupy when split
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(setq org-noter-doc-split-fraction '(0.6 . 0.6))
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;; Save the last visited location automatically; when starting a new session, go to that location
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(setq org-noter-auto-save-last-location nil)
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;; Add an empty line between each note's heading and content
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(setq org-noter-separate-notes-from-heading t)
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;; List of paths to check (non recursively) when searching for a notes file
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(setq org-noter-notes-search-path "~/Cloud/thesis/ressources/notes")
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(defun org-noter-init-pdf-view ()
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(pdf-view-fit-page-to-window)
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(pdf-view-auto-slice-minor-mode)
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(run-at-time "0.5 sec" nil #'org-noter))
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(add-hook 'pdf-view-mode-hook 'org-noter-init-pdf-view)
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(map!
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:map pdf-view-mode-map
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(:desc "Insert Note"
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:n "i" #'org-noter-insert-note))
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)
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#+end_src
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** Org Roam
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#+begin_src emacs-lisp
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(use-package! org-roam
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:config
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(setq org-roam-directory "~/Cloud/org-roam/")
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(setq org-roam-completion-system 'helm)
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)
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#+end_src
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** TODO Org Projects
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#+begin_src emacs-lisp :tangle no
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(setq org-publish-project-alist
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@ -1314,21 +1206,6 @@ Nice Functions:
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:with-todo-keywords nil
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:html-wrap-src-lines nil
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:table-of-contents nil)
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("bibliography"
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:base-directory "~/Cloud/thesis/ressources/notes/"
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:base-extension "org"
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:publishing-directory "~/Cloud/thesis/ressources/docs/"
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:author "Dehaeze Thomas"
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:email "dehaeze.thomas@gmail.com/"
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:recursive nil
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:publishing-function org-html-publish-to-html
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:auto-preamble t
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:auto-sitemap t
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:html-link-up "index.html"
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:html-link-home "index.html"
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:with-todo-keywords nil
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:html-wrap-src-lines nil
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:table-of-contents nil)
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("nass-simscape"
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:base-directory "~/Cloud/thesis/matlab/nass-simscape/org/"
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:base-extension "org"
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@ -1548,7 +1425,7 @@ Insert Link to paper
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(defun tdh-insert-paper-org-link (paper)
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"Insert an org link to some paper, choosing the file with completion"
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(interactive
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(list (read-file-name "Paper: " "~/Cloud/thesis/ressources/pdfs/" nil t)))
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(list (read-file-name "Paper: " "~/Cloud/pdfs/" nil t)))
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(insert (format "[[papers:%s]]" (file-name-base paper))))
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#+end_src
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@ -1557,7 +1434,7 @@ Insert Link to notes
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(defun tdh-insert-note-org-link (note)
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"Insert an org link to some note, choosing the file with completion"
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(interactive
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(list (read-file-name "Note: " "~/Cloud/thesis/ressources/pdfs/" nil t)))
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(list (read-file-name "Note: " "~/Cloud/pdfs/" nil t)))
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(insert (format "[[notes:%s]]" (file-name-base note))))
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#+end_src
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@ -1703,6 +1580,7 @@ Map Keys
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(map! :map org-mode-map
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(:prefix (",r" . "References")
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:n "b" 'helm-bibtex
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:n "B" 'helm-bibtex-with-local-bibliography
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:n "f" 'helm-bibtex-favorites
|
||||
:n "r" 'helm-resume)))
|
||||
#+end_src
|
||||
@ -1787,7 +1665,7 @@ Use the current window for C-c ' source editing
|
||||
#+end_src
|
||||
|
||||
** Library of Babel
|
||||
Add all named source blocks to =org-babel-library-of-babel=.
|
||||
Add all named source blocks to =org-babel-library-of-babel= ([[file:emacs-library-babel.org][link]]).
|
||||
|
||||
#+begin_src emacs-lisp
|
||||
(after! org
|
||||
@ -2095,6 +1973,251 @@ Map Functions
|
||||
:n "T" 'tdh-org-babel-tangle-subtree)))
|
||||
#+end_src
|
||||
|
||||
* Bibliography Management
|
||||
My bibliography management is mainly based on the following packages:
|
||||
- =org-ref= for nice citations
|
||||
- =org-noter= to annotate documents
|
||||
- =org-roam= to manage and links all my notes
|
||||
- =helm-bibtex= as an interface to easily find references
|
||||
- =org-roam-bibtex= that connects all the above packages
|
||||
|
||||
** Org Ref ([[https://github.com/jkitchin/org-ref][link]])
|
||||
Nice Functions:
|
||||
- =org-ref-insert-ref-link=
|
||||
- =org-ref-helm-insert-cite-link=
|
||||
- =org-ref-list-of-figures=
|
||||
- =org-ref-find-bad-citations=
|
||||
- =org-ref-clean-bibtex-entry=
|
||||
|
||||
#+begin_src emacs-lisp
|
||||
(use-package! org-ref
|
||||
:after org
|
||||
:init
|
||||
:config
|
||||
;; Folder where the notes files are located (or file if just one Note file)
|
||||
(setq org-ref-notes-directory "~/Cloud/brain")
|
||||
(setq org-ref-bibliography-notes "~/Cloud/brain")
|
||||
|
||||
;; Bibliography File
|
||||
(setq reftex-default-bibliography '("~/Cloud/brain/references.bib"))
|
||||
(setq org-ref-default-bibliography '("~/Cloud/brain/references.bib"))
|
||||
|
||||
;; Folder where all the pdf are located
|
||||
(setq org-ref-pdf-directory "~/Cloud/pdfs")
|
||||
|
||||
;; Tell org-ref to let helm-bibtex find notes for it
|
||||
(setq org-ref-notes-function
|
||||
(lambda (thekey)
|
||||
(let ((bibtex-completion-bibliography (org-ref-find-bibliography)))
|
||||
(bibtex-completion-edit-notes
|
||||
(list (car (org-ref-get-bibtex-key-and-file thekey)))))))
|
||||
|
||||
;; Problem with speed: don't display broken links
|
||||
(setq org-ref-show-broken-links t)
|
||||
;; Display information on the citation
|
||||
(setq org-ref-show-citation-on-enter t)
|
||||
|
||||
(add-to-list 'org-ref-helm-user-candidates
|
||||
'("Open pdf in Zathura" . (lambda () (call-process "zathura" nil 0 nil (concat
|
||||
(file-name-as-directory org-ref-pdf-directory)
|
||||
(car (org-ref-get-bibtex-key-and-file))
|
||||
".pdf"))))
|
||||
t)
|
||||
|
||||
(add-to-list 'org-ref-helm-user-candidates
|
||||
'("Drag and Drop" . (lambda () (call-process "/bin/bash" nil 0 nil "-c" (concat
|
||||
"dragon-drag-and-drop "
|
||||
(file-name-as-directory org-ref-pdf-directory)
|
||||
(car (org-ref-get-bibtex-key-and-file))
|
||||
".pdf"))))
|
||||
t)
|
||||
|
||||
(map!
|
||||
:map org-mode-map
|
||||
(:desc "Insert Link"
|
||||
:ni "C-c i" #'org-ref-insert-ref-link))
|
||||
)
|
||||
#+end_src
|
||||
|
||||
#+begin_src emacs-lisp
|
||||
(defun tdh-org-ref-open-pdf-at-point ()
|
||||
"Open the pdf in external program for bibtex key under point if it exists."
|
||||
(interactive)
|
||||
(let* ((results (org-ref-get-bibtex-key-and-file))
|
||||
(key (car results))
|
||||
(pdf-file (funcall org-ref-get-pdf-filename-function key)))
|
||||
(if (file-exists-p pdf-file)
|
||||
(call-process "zathura" nil 0 nil pdf-file)
|
||||
(message "no pdf found for %s" key))))
|
||||
#+end_src
|
||||
|
||||
** Org Noter ([[https://github.com/weirdNox/org-noter][link]])
|
||||
#+begin_src emacs-lisp
|
||||
(use-package! org-noter
|
||||
:defer t
|
||||
:after (:any org pdf-view)
|
||||
:config
|
||||
(setq org-noter-always-create-frame nil)
|
||||
|
||||
(setq org-noter-kill-frame-at-session-end nil)
|
||||
|
||||
;; Fraction of the frame that the document window will occupy when split
|
||||
(setq org-noter-doc-split-fraction '(0.6 . 0.6))
|
||||
|
||||
;; Save the last visited location automatically; when starting a new session, go to that location
|
||||
(setq org-noter-auto-save-last-location nil)
|
||||
|
||||
;; Add an empty line between each note's heading and content
|
||||
(setq org-noter-separate-notes-from-heading t)
|
||||
|
||||
;; List of paths to check (non recursively) when searching for a notes file
|
||||
(setq org-noter-notes-search-path "~/Cloud/brain")
|
||||
|
||||
(defun org-noter-init-pdf-view ()
|
||||
(pdf-view-fit-page-to-window)
|
||||
(pdf-view-auto-slice-minor-mode)
|
||||
(run-at-time "0.5 sec" nil #'org-noter))
|
||||
(add-hook 'pdf-view-mode-hook 'org-noter-init-pdf-view)
|
||||
|
||||
(map!
|
||||
:map pdf-view-mode-map
|
||||
(:desc "Insert Note"
|
||||
:n "i" #'org-noter-insert-note))
|
||||
)
|
||||
#+end_src
|
||||
|
||||
** Org Roam ([[https://github.com/jethrokuan/org-roam/][link]])
|
||||
#+begin_src emacs-lisp
|
||||
(use-package! org-roam
|
||||
:config
|
||||
(setq org-roam-directory "~/Cloud/brain/")
|
||||
(setq org-roam-completion-system 'helm)
|
||||
(setq org-roam-capture-templates
|
||||
`(("d" "default" plain (function org-roam--capture-get-point)
|
||||
"%?"
|
||||
:file-name "${slug}"
|
||||
:head ,(concat "#+TITLE: ${title}\n"
|
||||
"#+SETUPFILE ./org-roam-setup-file.org\n"
|
||||
"\n"
|
||||
"- Tags ::\n"
|
||||
"\n")
|
||||
:unnarrowed t)))
|
||||
)
|
||||
#+end_src
|
||||
|
||||
** Helm-Bibtex ([[https://github.com/tmalsburg/helm-bibtex][link]])
|
||||
#+begin_src emacs-lisp
|
||||
(use-package! helm-bibtex
|
||||
:init
|
||||
:config
|
||||
;; Bibliography file
|
||||
(setq bibtex-completion-bibliography "~/Cloud/brain/references.bib")
|
||||
|
||||
;; Directory with all the pdfs
|
||||
(setq bibtex-completion-library-path "~/Cloud/pdfs")
|
||||
|
||||
;; Directory with notes files
|
||||
(setq bibtex-completion-notes-path "~/Cloud/brain/")
|
||||
|
||||
(setq bibtex-completion-notes-extension ".org")
|
||||
|
||||
(setq bibtex-completion-pdf-extension '(".pdf" ".djvu"))
|
||||
|
||||
;; Use "tags" field when looking for bib entries
|
||||
(setq helm-bibtex-additional-search-fields '(tags))
|
||||
|
||||
(setq helm-bibtex-full-frame nil)
|
||||
|
||||
;; Display of bibtex entries with helm
|
||||
(setq bibtex-completion-display-formats
|
||||
'((t . "${author:36} ${title:*} ${year:4} ${=type=:7} ${=has-note=:1}")))
|
||||
|
||||
;; Special symbols for notes and pdf
|
||||
(setq bibtex-completion-pdf-symbol "⌘")
|
||||
(setq bibtex-completion-notes-symbol "✎")
|
||||
|
||||
;; Template used when creating new Note file
|
||||
(setq bibtex-completion-notes-template-multiple-files (concat "#+TITLE: ${title}\n"
|
||||
"#+NOTER_DOCUMENT: ../pdfs/${=key=}.pdf\n"
|
||||
"#+ROAM_KEY: cite:${=key=}\n"
|
||||
"\n"
|
||||
"- Author :: ${author}\n"
|
||||
"- Year :: ${year}\n"
|
||||
"- DOI :: ${DOI}\n"
|
||||
"\n"))
|
||||
|
||||
;; Make "Edit notes" the default action
|
||||
(helm-delete-action-from-source "Edit notes" helm-source-bibtex)
|
||||
(helm-add-action-to-source "Edit notes" 'helm-bibtex-edit-notes helm-source-bibtex 0)
|
||||
|
||||
(helm-delete-action-from-source "Open PDF Externally" helm-source-bibtex)
|
||||
(helm-add-action-to-source "Open PDF Externally" 'tdehaeze/open-pdf-externally helm-source-bibtex 1)
|
||||
)
|
||||
#+end_src
|
||||
|
||||
Open pdf externally
|
||||
#+begin_src emacs-lisp
|
||||
(defun tdehaeze/open-pdf-externally (key)
|
||||
(call-process "zathura" nil 0 nil (nth 0 (-cons-to-list (bibtex-completion-find-pdf key)))))
|
||||
#+end_src
|
||||
|
||||
Special Commands
|
||||
#+begin_src emacs-lisp
|
||||
(defun helm-bibtex-favorites (&optional arg)
|
||||
"Search Favorite BibTeX entries"
|
||||
(interactive "P")
|
||||
(helm-bibtex arg nil "favorite "))
|
||||
#+end_src
|
||||
|
||||
List all element of the bibliography without pdf associated
|
||||
#+begin_src emacs-lisp
|
||||
(defun tdh-list-bib-without-pdf-associated ()
|
||||
(interactive)
|
||||
(bibtex-completion-init)
|
||||
(setq candidates (bibtex-completion-candidates))
|
||||
|
||||
(defun canditate-is-pdf-present (candidate)
|
||||
(bibtex-completion-find-pdf-in-library (cdr (assoc "=key=" candidate)))
|
||||
)
|
||||
|
||||
(setq candidates-without-pdf (remove-if #'canditate-is-pdf-present candidates))
|
||||
|
||||
(setq candidate-without-pdf-names (mapcar
|
||||
(lambda (x) (cdr (assoc "title" x)))
|
||||
candidates-without-pdf))
|
||||
|
||||
(with-output-to-temp-buffer "*bib-without-pdf*" (princ (string-join candidate-without-pdf-names "\n")))
|
||||
(switch-to-buffer-other-window "*bib-without-pdf*")
|
||||
)
|
||||
#+end_src
|
||||
|
||||
** Org-Roam-Bibtex ([[https://github.com/Zaeph/org-roam-bibtex][link]])
|
||||
#+begin_src emacs-lisp
|
||||
(use-package! org-roam-bibtex
|
||||
:load-path "~/.config/doom/packages/org-roam-bibtex/"
|
||||
:config
|
||||
(org-roam-bibtex-mode)
|
||||
(setq org-roam-bibtex-preformat-keywords `("=key=" "title" "author" "year"))
|
||||
|
||||
(setq org-roam-bibtex-template
|
||||
`(("r" "ref" plain (function org-roam-capture--get-point) ""
|
||||
:file-name "${=key=}"
|
||||
:head ,(concat "#+TITLE: ${title}\n"
|
||||
"#+SETUPFILE ./org-notes-setup-file.org\n"
|
||||
"#+ROAM_KEY: ${ref}\n"
|
||||
"\n"
|
||||
"- Tags :: %?\n"
|
||||
"- Author(s) :: ${author}\n"
|
||||
"- Year :: ${year}\n"
|
||||
"\n"
|
||||
"* Notes :ignore:\n"
|
||||
":PROPERTIES:\n"
|
||||
":NOTER_DOCUMENT: ../pdfs/${=key=}.pdf\n"
|
||||
":END:\n")
|
||||
:unnarrowed t)))
|
||||
)
|
||||
#+end_src
|
||||
|
||||
* LaTeX
|
||||
- https://tex.stackexchange.com/questions/52179/what-is-your-favorite-emacs-and-or-auctex-command-trick
|
||||
- https://tex.stackexchange.com/questions/20843/useful-shortcuts-or-key-bindings-or-predefined-commands-for-emacsauctex
|
||||
@ -2139,142 +2262,6 @@ Map Functions
|
||||
(bibtex-set-dialect 'BibTeX))
|
||||
#+end_src
|
||||
|
||||
* Helm-Bibtex
|
||||
** General Config
|
||||
#+begin_src emacs-lisp
|
||||
(use-package! helm-bibtex
|
||||
:init
|
||||
:config
|
||||
;; Bibliography file
|
||||
(setq bibtex-completion-bibliography "~/Cloud/thesis/ressources/references.bib")
|
||||
|
||||
;; Directory with all the pdfs
|
||||
(setq bibtex-completion-library-path "~/Cloud/thesis/ressources/pdfs")
|
||||
|
||||
;; Directory with notes files
|
||||
(setq bibtex-completion-notes-path "~/Cloud/thesis/ressources/notes/notes.org")
|
||||
|
||||
(setq bibtex-completion-notes-extension ".org")
|
||||
|
||||
(setq bibtex-completion-pdf-extension '(".pdf" ".djvu"))
|
||||
|
||||
;; Use "tags" field when looking for bib entries
|
||||
(setq helm-bibtex-additional-search-fields '(tags))
|
||||
|
||||
(setq helm-bibtex-full-frame nil)
|
||||
|
||||
;; Display of bibtex entries with helm
|
||||
(setq bibtex-completion-display-formats
|
||||
'((t . "${author:36} ${title:*} ${year:4} ${=type=:7} ${=has-note=:1}")))
|
||||
|
||||
;; Special symbols for notes and pdf
|
||||
(setq bibtex-completion-pdf-symbol "⌘")
|
||||
(setq bibtex-completion-notes-symbol "✎")
|
||||
|
||||
;; Template used when creating new Note file
|
||||
(setq bibtex-completion-notes-template-multiple-files (concat "#+TITLE: ${title}\n"
|
||||
":DRAWER:\n"
|
||||
"#+LATEX_CLASS: biblioreport\n"
|
||||
"\n"
|
||||
"#+OPTIONS: toc:nil title:nil\n"
|
||||
"#+OPTIONS: ':t -:t\n"
|
||||
"\n"
|
||||
"#+LATEX_HEADER: \\newcommand{\\refType}{${=type=}}\n"
|
||||
"#+LATEX_HEADER: \\newcommand{\\refKey}{${=key=}}\n"
|
||||
"#+LATEX_HEADER: \\newcommand{\\refTitle}{${title}}\n"
|
||||
"#+LATEX_HEADER: \\newcommand{\\refAuthor}{${author-or-editor}}\n"
|
||||
"#+LATEX_HEADER: \\newcommand{\\refJournal}{${journal}}\n"
|
||||
"#+LATEX_HEADER: \\newcommand{\\refYear}{${year}}\n"
|
||||
"#+LATEX_HEADER: \\newcommand{\\refDoi}{${DOI}}\n"
|
||||
"#+LATEX_HEADER: \\newcommand{\\refUrl}{${url}}\n"
|
||||
"#+LATEX_HEADER: \\newcommand{\\refKeywords}{${tags}}\n"
|
||||
"#+LATEX_HEADER: \\input{config.tex}\n"
|
||||
"#+LATEX_HEADER: \\graphicspath{{./figs/${=key=}/}}\n"
|
||||
"# #+TOC: headlines 2\n"
|
||||
":END:\n"
|
||||
"\n"
|
||||
"#+BEGIN_abstract\n"
|
||||
"\n"
|
||||
"#+END_abstract\n"
|
||||
"\n"
|
||||
"* ${title} :${=type=}:ignore:\n"
|
||||
":PROPERTIES:\n"
|
||||
":CUSTOM_ID: ${=key=}\n"
|
||||
":AUTHOR: ${author}\n"
|
||||
":TYPE: ${=type=}\n"
|
||||
":JOURNAL: ${journal}\n"
|
||||
":YEAR: ${year}\n"
|
||||
":VOLUME: ${volume}\n"
|
||||
":PAGES: ${pages}\n"
|
||||
":DOI: ${DOI}\n"
|
||||
":URL: ${url}\n"
|
||||
":NOTER_DOCUMENT: ../pdfs/${=key=}.pdf\n"
|
||||
":END:\n"
|
||||
"\n"))
|
||||
|
||||
(setq bibtex-completion-notes-template-one-file (concat "\n"
|
||||
"* ${author-abbrev} (${year}): ${title} :${=type=}:ignore:\n"
|
||||
":PROPERTIES:\n"
|
||||
":CUSTOM_ID: ${=key=}\n"
|
||||
":EXPORT_FILE_NAME: ${=key=}\n"
|
||||
":EXPORT_TITLE: ${title}\n"
|
||||
":AUTHOR: ${author}\n"
|
||||
":TYPE: ${=type=}\n"
|
||||
":JOURNAL: ${journal}\n"
|
||||
":YEAR: ${year}\n"
|
||||
":VOLUME: ${volume}\n"
|
||||
":PAGES: ${pages}\n"
|
||||
":DOI: ${DOI}\n"
|
||||
":URL: ${url}\n"
|
||||
":NOTER_DOCUMENT: ../pdfs/${=key=}.pdf\n"
|
||||
":END:\n"
|
||||
"\n"))
|
||||
|
||||
;; Make "Edit notes" the default action
|
||||
(helm-delete-action-from-source "Edit notes" helm-source-bibtex)
|
||||
(helm-add-action-to-source "Edit notes" 'helm-bibtex-edit-notes helm-source-bibtex 0)
|
||||
|
||||
(helm-delete-action-from-source "Open PDF Externally" helm-source-bibtex)
|
||||
(helm-add-action-to-source "Open PDF Externally" 'tdehaeze/open-pdf-externally helm-source-bibtex 1)
|
||||
)
|
||||
#+end_src
|
||||
|
||||
** Open pdf externally
|
||||
#+begin_src emacs-lisp
|
||||
(defun tdehaeze/open-pdf-externally (key)
|
||||
(call-process "zathura" nil 0 nil (nth 0 (-cons-to-list (bibtex-completion-find-pdf key)))))
|
||||
#+end_src
|
||||
|
||||
** Special Commands
|
||||
#+begin_src emacs-lisp
|
||||
(defun helm-bibtex-favorites (&optional arg)
|
||||
"Search Favorite BibTeX entries"
|
||||
(interactive "P")
|
||||
(helm-bibtex arg nil "favorite "))
|
||||
#+end_src
|
||||
|
||||
** List all element of the bibliography without pdf associated
|
||||
#+begin_src emacs-lisp
|
||||
(defun tdh-list-bib-without-pdf-associated ()
|
||||
(interactive)
|
||||
(bibtex-completion-init)
|
||||
(setq candidates (bibtex-completion-candidates))
|
||||
|
||||
(defun canditate-is-pdf-present (candidate)
|
||||
(bibtex-completion-find-pdf-in-library (cdr (assoc "=key=" candidate)))
|
||||
)
|
||||
|
||||
(setq candidates-without-pdf (remove-if #'canditate-is-pdf-present candidates))
|
||||
|
||||
(setq candidate-without-pdf-names (mapcar
|
||||
(lambda (x) (cdr (assoc "title" x)))
|
||||
candidates-without-pdf))
|
||||
|
||||
(with-output-to-temp-buffer "*bib-without-pdf*" (princ (string-join candidate-without-pdf-names "\n")))
|
||||
(switch-to-buffer-other-window "*bib-without-pdf*")
|
||||
)
|
||||
#+end_src
|
||||
|
||||
* Matlab
|
||||
- https://sourceforge.net/projects/matlab-emacs/
|
||||
|
||||
@ -2362,7 +2349,7 @@ Map Functions
|
||||
|
||||
|
||||
* Mu4e
|
||||
** Ressources
|
||||
** Resources
|
||||
Documentation:
|
||||
- [ ] Mu4e documentation: http://www.djcbsoftware.nl/code/mu/mu4e/index.html#Top
|
||||
- [ ] https://github.com/djcb/mu
|
||||
@ -2553,20 +2540,6 @@ Choose account label to feed msmtp -a option based on From header in Message buf
|
||||
)
|
||||
#+end_src
|
||||
|
||||
* PDF-Tools
|
||||
#+begin_src emacs-lisp
|
||||
(use-package! pdf-tools
|
||||
:config
|
||||
(add-hook 'pdf-view-mode-hook (lambda() (linum-mode -1)))
|
||||
)
|
||||
#+end_src
|
||||
|
||||
* Yassnippets
|
||||
#+begin_src emacs-lisp
|
||||
(push "~/.config/doom/snippets" yas-snippet-dirs)
|
||||
(yas-global-mode 1)
|
||||
#+end_src
|
||||
|
||||
* Doom =init.el=
|
||||
:PROPERTIES:
|
||||
:header-args: :tangle ~/.config/doom/init.el
|
||||
|
||||
Loading…
Reference in New Issue
Block a user