From e1b6fdea651ee684b46f12a0e696c5e1ab61e57b Mon Sep 17 00:00:00 2001 From: Thomas Dehaeze Date: Thu, 16 Apr 2020 15:55:36 +0200 Subject: [PATCH] Huge Update - Change all ressources directory --- dotfiles/doom.org | 673 ++++++++++++++++++++++------------------------ 1 file changed, 323 insertions(+), 350 deletions(-) diff --git a/dotfiles/doom.org b/dotfiles/doom.org index 274cabd..f7902d9 100644 --- a/dotfiles/doom.org +++ b/dotfiles/doom.org @@ -82,7 +82,8 @@ Documentation: | C-c C-v h | org-babel-describe-bindings | | C-c C-v x | org-babel-do-key-sequence-in-edit-buffer | -* Personal Information +* Basic Configuration +** Personal Information #+begin_src emacs-lisp ;; These are used for a number of things, particularly for GPG configuration, ;; some email clients, file templates and snippets. @@ -90,7 +91,7 @@ Documentation: user-mail-address "dehaeze.thomas@gmail.com") #+end_src -* Doom Config +** Doom Config #+begin_src emacs-lisp (setq doom-font (font-spec :family "Hack Nerd Font Mono" :size 12 :weight 'semi-light) doom-variable-pitch-font (font-spec :family "Hack Nerd Font Mono") @@ -106,7 +107,7 @@ Documentation: (setq display-line-numbers-type t) #+end_src -* Evil +** Evil #+begin_src emacs-lisp (after! evil (map! :m "-" #'dired-jump)) @@ -125,7 +126,7 @@ Make horizontal movement cross lines (setq-default evil-cross-lines t) #+end_src -* Which Key +** Which Key #+begin_src emacs-lisp (after! which-key (setq which-key-idle-delay 0.5 @@ -133,7 +134,6 @@ Make horizontal movement cross lines which-key-sort-order 'which-key-key-order-alpha)) #+end_src -* Basic ** Visual Automatic line wrap. #+begin_src emacs-lisp @@ -181,13 +181,27 @@ Turn off auto-fill mode that add line breaks. "C-i" #'better-jumper-jump-forward)) #+end_src -* Magit +** Magit #+begin_src emacs-lisp (setenv "GIT_ASKPASS" "git-gui--askpass") (setq magit-diff-refine-hunk 'all) #+end_src +** PDF-Tools +#+begin_src emacs-lisp + (use-package! pdf-tools + :config + (add-hook 'pdf-view-mode-hook (lambda() (linum-mode -1))) + ) +#+end_src + +** Yassnippets +#+begin_src emacs-lisp + (push "~/.config/doom/snippets" yas-snippet-dirs) + (yas-global-mode 1) +#+end_src + * Org Mode - http://cachestocaches.com/2016/9/my-workflow-org-agenda/ - http://doc.norang.ca/org-mode.html#TodoKeywords @@ -239,9 +253,9 @@ Display the real size of images and not the one set with =attr_latex: :width \li (map! :map org-mode-map "C-c l" 'org-store-link) (setq org-link-abbrev-alist - '(("bib" . "~/Cloud/thesis/ressources/references.bib::%s") - ("notes" . "~/Cloud/thesis/ressources/notes/notes.org::#%s") - ("papers" . "~/Cloud/thesis/ressources/pdfs/%s.pdf"))) + '(("bib" . "~/Cloud/brain/references.bib::%s") + ("notes" . "~/Cloud/brain/%s.org") + ("papers" . "~/Cloud/pdfs/%s.pdf"))) ) #+end_src @@ -296,8 +310,9 @@ Display the real size of images and not the one set with =attr_latex: :width \li ) #+end_src -** Archive subtrees under the same hierarchy as original in the archive files +** Org Archive https://gist.github.com/Fuco1/e86fb5e0a5bb71ceafccedb5ca22fcfb +Archive subtrees under the same hierarchy as original in the archive files #+begin_src emacs-lisp (after! org @@ -347,7 +362,7 @@ https://gist.github.com/Fuco1/e86fb5e0a5bb71ceafccedb5ca22fcfb #+end_src ** Org Agenda -*** General configuration +General configuration #+begin_src emacs-lisp (after! org (map! :map org-mode-map "C-c a" 'org-agenda) @@ -380,9 +395,7 @@ https://gist.github.com/Fuco1/e86fb5e0a5bb71ceafccedb5ca22fcfb ) #+end_src -*** Org Agenda Custom Views -https://blog.aaronbieber.com/2016/09/24/an-agenda-for-life-with-org-mode.html - +Org Agenda Custom Views #+begin_src emacs-lisp (after! org-agenda (defun tdh-org-agenda-skip-scheduled () @@ -442,7 +455,7 @@ https://blog.aaronbieber.com/2016/09/24/an-agenda-for-life-with-org-mode.html (level 1) (not (tags "article" "inproceedings" "techreport" "inbook" "book" "phdthesis"))) ((org-ql-block-header "Other Things")))) - ((org-agenda-files '("~/Cloud/thesis/ressources/notes/")))) + ((org-agenda-files '("~/Cloud/brain/")))) ("r" "Articles and Books to read" ((org-ql-block '(and (todo "READ") (level 1) @@ -460,7 +473,7 @@ https://blog.aaronbieber.com/2016/09/24/an-agenda-for-life-with-org-mode.html (level 1) (not (tags "article" "inproceedings" "techreport" "inbook" "book" "phdthesis"))) ((org-ql-block-header "Other Things to Read")))) - ((org-agenda-files '("~/Cloud/thesis/ressources/notes/"))))) + ((org-agenda-files '("~/Cloud/brain/"))))) ) ) #+end_src @@ -539,51 +552,51 @@ Documentation: #+begin_src emacs-lisp (after! org (setq org-capture-templates - (quote (("t" ; key - "todo" ; name - entry ; type - (file+headline "~/Cloud/org/work-notebook.org" "Inbox") ; target - "** TODO %?\n%U\n" ; template - ) - ("M" ; key - "Meeting" ; name - entry ; type - (file+headline "~/Cloud/org/work-notebook.org" "Meetings") ; target - "** %?\n%(org-insert-time-stamp (org-read-date nil t \"+0d\"))\n" ; template - ) - ("m" ; key - "mail" ; name - entry ; type - (file+headline "~/Cloud/org/work-notebook.org" "Mails") ; target - "** TODO [#A] %?\nSCHEDULED: %(org-insert-time-stamp (org-read-date nil t \"+0d\"))\n%a\n" ; template - ) - ("pm" - "Org-Protocol Mail" - entry - (file+headline "~/Cloud/org/work-notebook.org" "Mails") - "* MAIL %:description [[message:%:link][link]]\nSCHEDULED: %(org-insert-time-stamp (org-read-date nil t \"+0d\"))\n\n" - :immediate-finish t - ) - ("pu" - "Org-Protocol Url" - entry - (file+headline "~/Cloud/org/work-notebook.org" "Inbox") - "* [[%:link][%:description]]\nCaptured On: %U\n\n" - :immediate-finish t - ) - ("pt" - "Org-Protocol text" - entry - (file+headline "~/Cloud/org/work-notebook.org" "Inbox") - "* %:description\nSource: %:link\nCaptured On: %U\n\n#+BEGIN_QUOTE\n%i\n#+END_QUOTE\n\n" - :immediate-finish t - ) - ))) - ) + (quote (("t" ; key + "todo" ; name + entry ; type + (file+headline "~/Cloud/org/work-notebook.org" "Inbox") ; target + "** TODO %?\n%U\n" ; template + ) + ("M" ; key + "Meeting" ; name + entry ; type + (file+headline "~/Cloud/org/work-notebook.org" "Meetings") ; target + "** %?\n%(org-insert-time-stamp (org-read-date nil t \"+0d\"))\n" ; template + ) + ("m" ; key + "mail" ; name + entry ; type + (file+headline "~/Cloud/org/work-notebook.org" "Mails") ; target + "** TODO [#A] %?\nSCHEDULED: %(org-insert-time-stamp (org-read-date nil t \"+0d\"))\n%a\n" ; template + ) + ("pm" + "Org-Protocol Mail" + entry + (file+headline "~/Cloud/org/work-notebook.org" "Mails") + "* MAIL %:description [[message:%:link][link]]\nSCHEDULED: %(org-insert-time-stamp (org-read-date nil t \"+0d\"))\n\n" + :immediate-finish t + ) + ("pu" + "Org-Protocol Url" + entry + (file+headline "~/Cloud/org/work-notebook.org" "Inbox") + "* [[%:link][%:description]]\nCaptured On: %U\n\n" + :immediate-finish t + ) + ("pt" + "Org-Protocol text" + entry + (file+headline "~/Cloud/org/work-notebook.org" "Inbox") + "* %:description\nSource: %:link\nCaptured On: %U\n\n#+BEGIN_QUOTE\n%i\n#+END_QUOTE\n\n" + :immediate-finish t + ) + ))) + ) #+end_src ** Org Export -*** Basic +Basic configuration: #+begin_src emacs-lisp (after! org ;; How many levels of headline to export @@ -597,7 +610,7 @@ Documentation: ) #+end_src -*** Defaults +Some defaults: #+begin_src emacs-lisp (after! org (setq org-export-with-author t) @@ -610,7 +623,7 @@ Documentation: ) #+end_src -*** Do not export headline with the =:ignore:= tag +Do not export headline with the =:ignore:= tag: #+begin_src emacs-lisp ;; Used to not export headings with :ignore: tag (after! org @@ -1167,127 +1180,6 @@ https://www.reddit.com/r/orgmode/comments/7u2n0h/tip_for_defining_latex_macros_f #+end_src -** Org Ref -Ressources: -- https://github.com/tmalsburg/helm-bibtex -- https://github.com/jkitchin/org-ref -- https://www.reddit.com/r/emacs/comments/4gudyw/help_me_with_my_orgmode_workflow_for_notetaking/ - -Nice Functions: -- =org-ref-insert-ref-link= -- =org-ref-helm-insert-cite-link= -- =org-ref-list-of-figures= -- =org-ref-find-bad-citations= -- =org-ref-clean-bibtex-entry= - -#+begin_src emacs-lisp - (use-package! org-ref - :after org - :init - :config - ;; Folder where the notes files are located (or file if just one Note file) - (setq org-ref-notes-directory "~/Cloud/thesis/ressources/notes") - (setq org-ref-bibliography-notes "~/Cloud/thesis/ressources/notes") - - ;; Bibliography File - (setq reftex-default-bibliography '("~/Cloud/thesis/ressources/references.bib")) - (setq org-ref-default-bibliography '("~/Cloud/thesis/ressources/references.bib")) - - ;; Folder where all the pdf are located - (setq org-ref-pdf-directory "~/Cloud/thesis/ressources/pdfs") - - ;; Tell org-ref to let helm-bibtex find notes for it - (setq org-ref-notes-function - (lambda (thekey) - (let ((bibtex-completion-bibliography (org-ref-find-bibliography))) - (bibtex-completion-edit-notes - (list (car (org-ref-get-bibtex-key-and-file thekey))))))) - - ;; Problem with speed: don't display broken links - (setq org-ref-show-broken-links t) - ;; Display information on the citation - (setq org-ref-show-citation-on-enter t) - - (add-to-list 'org-ref-helm-user-candidates - '("Open pdf in Zathura" . (lambda () (call-process "zathura" nil 0 nil (concat - (file-name-as-directory org-ref-pdf-directory) - (car (org-ref-get-bibtex-key-and-file)) - ".pdf")))) - t) - - (add-to-list 'org-ref-helm-user-candidates - '("Drag and Drop" . (lambda () (call-process "/bin/bash" nil 0 nil "-c" (concat - "dragon-drag-and-drop " - (file-name-as-directory org-ref-pdf-directory) - (car (org-ref-get-bibtex-key-and-file)) - ".pdf")))) - t) - - (map! - :map org-mode-map - (:desc "Insert Link" - :ni "C-c i" #'org-ref-insert-ref-link)) - ) -#+end_src - -#+begin_src emacs-lisp - (defun tdh-org-ref-open-pdf-at-point () - "Open the pdf in external program for bibtex key under point if it exists." - (interactive) - (let* ((results (org-ref-get-bibtex-key-and-file)) - (key (car results)) - (pdf-file (funcall org-ref-get-pdf-filename-function key))) - (if (file-exists-p pdf-file) - (call-process "zathura" nil 0 nil pdf-file) - (message "no pdf found for %s" key)))) -#+end_src - -** Org Noter -- https://github.com/weirdNox/org-noter - -#+begin_src emacs-lisp - (use-package! org-noter - :defer t - :after (:any org pdf-view) - :config - (setq org-noter-always-create-frame nil) - - (setq org-noter-kill-frame-at-session-end nil) - - ;; Fraction of the frame that the document window will occupy when split - (setq org-noter-doc-split-fraction '(0.6 . 0.6)) - - ;; Save the last visited location automatically; when starting a new session, go to that location - (setq org-noter-auto-save-last-location nil) - - ;; Add an empty line between each note's heading and content - (setq org-noter-separate-notes-from-heading t) - - ;; List of paths to check (non recursively) when searching for a notes file - (setq org-noter-notes-search-path "~/Cloud/thesis/ressources/notes") - - (defun org-noter-init-pdf-view () - (pdf-view-fit-page-to-window) - (pdf-view-auto-slice-minor-mode) - (run-at-time "0.5 sec" nil #'org-noter)) - (add-hook 'pdf-view-mode-hook 'org-noter-init-pdf-view) - - (map! - :map pdf-view-mode-map - (:desc "Insert Note" - :n "i" #'org-noter-insert-note)) - ) -#+end_src - -** Org Roam -#+begin_src emacs-lisp - (use-package! org-roam - :config - (setq org-roam-directory "~/Cloud/org-roam/") - (setq org-roam-completion-system 'helm) - ) -#+end_src - ** TODO Org Projects #+begin_src emacs-lisp :tangle no (setq org-publish-project-alist @@ -1314,21 +1206,6 @@ Nice Functions: :with-todo-keywords nil :html-wrap-src-lines nil :table-of-contents nil) - ("bibliography" - :base-directory "~/Cloud/thesis/ressources/notes/" - :base-extension "org" - :publishing-directory "~/Cloud/thesis/ressources/docs/" - :author "Dehaeze Thomas" - :email "dehaeze.thomas@gmail.com/" - :recursive nil - :publishing-function org-html-publish-to-html - :auto-preamble t - :auto-sitemap t - :html-link-up "index.html" - :html-link-home "index.html" - :with-todo-keywords nil - :html-wrap-src-lines nil - :table-of-contents nil) ("nass-simscape" :base-directory "~/Cloud/thesis/matlab/nass-simscape/org/" :base-extension "org" @@ -1548,7 +1425,7 @@ Insert Link to paper (defun tdh-insert-paper-org-link (paper) "Insert an org link to some paper, choosing the file with completion" (interactive - (list (read-file-name "Paper: " "~/Cloud/thesis/ressources/pdfs/" nil t))) + (list (read-file-name "Paper: " "~/Cloud/pdfs/" nil t))) (insert (format "[[papers:%s]]" (file-name-base paper)))) #+end_src @@ -1557,7 +1434,7 @@ Insert Link to notes (defun tdh-insert-note-org-link (note) "Insert an org link to some note, choosing the file with completion" (interactive - (list (read-file-name "Note: " "~/Cloud/thesis/ressources/pdfs/" nil t))) + (list (read-file-name "Note: " "~/Cloud/pdfs/" nil t))) (insert (format "[[notes:%s]]" (file-name-base note)))) #+end_src @@ -1703,6 +1580,7 @@ Map Keys (map! :map org-mode-map (:prefix (",r" . "References") :n "b" 'helm-bibtex + :n "B" 'helm-bibtex-with-local-bibliography :n "f" 'helm-bibtex-favorites :n "r" 'helm-resume))) #+end_src @@ -1787,7 +1665,7 @@ Use the current window for C-c ' source editing #+end_src ** Library of Babel -Add all named source blocks to =org-babel-library-of-babel=. +Add all named source blocks to =org-babel-library-of-babel= ([[file:emacs-library-babel.org][link]]). #+begin_src emacs-lisp (after! org @@ -2095,6 +1973,251 @@ Map Functions :n "T" 'tdh-org-babel-tangle-subtree))) #+end_src +* Bibliography Management +My bibliography management is mainly based on the following packages: +- =org-ref= for nice citations +- =org-noter= to annotate documents +- =org-roam= to manage and links all my notes +- =helm-bibtex= as an interface to easily find references +- =org-roam-bibtex= that connects all the above packages + +** Org Ref ([[https://github.com/jkitchin/org-ref][link]]) +Nice Functions: +- =org-ref-insert-ref-link= +- =org-ref-helm-insert-cite-link= +- =org-ref-list-of-figures= +- =org-ref-find-bad-citations= +- =org-ref-clean-bibtex-entry= + +#+begin_src emacs-lisp + (use-package! org-ref + :after org + :init + :config + ;; Folder where the notes files are located (or file if just one Note file) + (setq org-ref-notes-directory "~/Cloud/brain") + (setq org-ref-bibliography-notes "~/Cloud/brain") + + ;; Bibliography File + (setq reftex-default-bibliography '("~/Cloud/brain/references.bib")) + (setq org-ref-default-bibliography '("~/Cloud/brain/references.bib")) + + ;; Folder where all the pdf are located + (setq org-ref-pdf-directory "~/Cloud/pdfs") + + ;; Tell org-ref to let helm-bibtex find notes for it + (setq org-ref-notes-function + (lambda (thekey) + (let ((bibtex-completion-bibliography (org-ref-find-bibliography))) + (bibtex-completion-edit-notes + (list (car (org-ref-get-bibtex-key-and-file thekey))))))) + + ;; Problem with speed: don't display broken links + (setq org-ref-show-broken-links t) + ;; Display information on the citation + (setq org-ref-show-citation-on-enter t) + + (add-to-list 'org-ref-helm-user-candidates + '("Open pdf in Zathura" . (lambda () (call-process "zathura" nil 0 nil (concat + (file-name-as-directory org-ref-pdf-directory) + (car (org-ref-get-bibtex-key-and-file)) + ".pdf")))) + t) + + (add-to-list 'org-ref-helm-user-candidates + '("Drag and Drop" . (lambda () (call-process "/bin/bash" nil 0 nil "-c" (concat + "dragon-drag-and-drop " + (file-name-as-directory org-ref-pdf-directory) + (car (org-ref-get-bibtex-key-and-file)) + ".pdf")))) + t) + + (map! + :map org-mode-map + (:desc "Insert Link" + :ni "C-c i" #'org-ref-insert-ref-link)) + ) +#+end_src + +#+begin_src emacs-lisp + (defun tdh-org-ref-open-pdf-at-point () + "Open the pdf in external program for bibtex key under point if it exists." + (interactive) + (let* ((results (org-ref-get-bibtex-key-and-file)) + (key (car results)) + (pdf-file (funcall org-ref-get-pdf-filename-function key))) + (if (file-exists-p pdf-file) + (call-process "zathura" nil 0 nil pdf-file) + (message "no pdf found for %s" key)))) +#+end_src + +** Org Noter ([[https://github.com/weirdNox/org-noter][link]]) +#+begin_src emacs-lisp + (use-package! org-noter + :defer t + :after (:any org pdf-view) + :config + (setq org-noter-always-create-frame nil) + + (setq org-noter-kill-frame-at-session-end nil) + + ;; Fraction of the frame that the document window will occupy when split + (setq org-noter-doc-split-fraction '(0.6 . 0.6)) + + ;; Save the last visited location automatically; when starting a new session, go to that location + (setq org-noter-auto-save-last-location nil) + + ;; Add an empty line between each note's heading and content + (setq org-noter-separate-notes-from-heading t) + + ;; List of paths to check (non recursively) when searching for a notes file + (setq org-noter-notes-search-path "~/Cloud/brain") + + (defun org-noter-init-pdf-view () + (pdf-view-fit-page-to-window) + (pdf-view-auto-slice-minor-mode) + (run-at-time "0.5 sec" nil #'org-noter)) + (add-hook 'pdf-view-mode-hook 'org-noter-init-pdf-view) + + (map! + :map pdf-view-mode-map + (:desc "Insert Note" + :n "i" #'org-noter-insert-note)) + ) +#+end_src + +** Org Roam ([[https://github.com/jethrokuan/org-roam/][link]]) +#+begin_src emacs-lisp + (use-package! org-roam + :config + (setq org-roam-directory "~/Cloud/brain/") + (setq org-roam-completion-system 'helm) + (setq org-roam-capture-templates + `(("d" "default" plain (function org-roam--capture-get-point) + "%?" + :file-name "${slug}" + :head ,(concat "#+TITLE: ${title}\n" + "#+SETUPFILE ./org-roam-setup-file.org\n" + "\n" + "- Tags ::\n" + "\n") + :unnarrowed t))) + ) +#+end_src + +** Helm-Bibtex ([[https://github.com/tmalsburg/helm-bibtex][link]]) +#+begin_src emacs-lisp + (use-package! helm-bibtex + :init + :config + ;; Bibliography file + (setq bibtex-completion-bibliography "~/Cloud/brain/references.bib") + + ;; Directory with all the pdfs + (setq bibtex-completion-library-path "~/Cloud/pdfs") + + ;; Directory with notes files + (setq bibtex-completion-notes-path "~/Cloud/brain/") + + (setq bibtex-completion-notes-extension ".org") + + (setq bibtex-completion-pdf-extension '(".pdf" ".djvu")) + + ;; Use "tags" field when looking for bib entries + (setq helm-bibtex-additional-search-fields '(tags)) + + (setq helm-bibtex-full-frame nil) + + ;; Display of bibtex entries with helm + (setq bibtex-completion-display-formats + '((t . "${author:36} ${title:*} ${year:4} ${=type=:7} ${=has-note=:1}"))) + + ;; Special symbols for notes and pdf + (setq bibtex-completion-pdf-symbol "⌘") + (setq bibtex-completion-notes-symbol "✎") + + ;; Template used when creating new Note file + (setq bibtex-completion-notes-template-multiple-files (concat "#+TITLE: ${title}\n" + "#+NOTER_DOCUMENT: ../pdfs/${=key=}.pdf\n" + "#+ROAM_KEY: cite:${=key=}\n" + "\n" + "- Author :: ${author}\n" + "- Year :: ${year}\n" + "- DOI :: ${DOI}\n" + "\n")) + + ;; Make "Edit notes" the default action + (helm-delete-action-from-source "Edit notes" helm-source-bibtex) + (helm-add-action-to-source "Edit notes" 'helm-bibtex-edit-notes helm-source-bibtex 0) + + (helm-delete-action-from-source "Open PDF Externally" helm-source-bibtex) + (helm-add-action-to-source "Open PDF Externally" 'tdehaeze/open-pdf-externally helm-source-bibtex 1) + ) +#+end_src + +Open pdf externally +#+begin_src emacs-lisp + (defun tdehaeze/open-pdf-externally (key) + (call-process "zathura" nil 0 nil (nth 0 (-cons-to-list (bibtex-completion-find-pdf key))))) +#+end_src + +Special Commands +#+begin_src emacs-lisp + (defun helm-bibtex-favorites (&optional arg) + "Search Favorite BibTeX entries" + (interactive "P") + (helm-bibtex arg nil "favorite ")) +#+end_src + +List all element of the bibliography without pdf associated +#+begin_src emacs-lisp + (defun tdh-list-bib-without-pdf-associated () + (interactive) + (bibtex-completion-init) + (setq candidates (bibtex-completion-candidates)) + + (defun canditate-is-pdf-present (candidate) + (bibtex-completion-find-pdf-in-library (cdr (assoc "=key=" candidate))) + ) + + (setq candidates-without-pdf (remove-if #'canditate-is-pdf-present candidates)) + + (setq candidate-without-pdf-names (mapcar + (lambda (x) (cdr (assoc "title" x))) + candidates-without-pdf)) + + (with-output-to-temp-buffer "*bib-without-pdf*" (princ (string-join candidate-without-pdf-names "\n"))) + (switch-to-buffer-other-window "*bib-without-pdf*") + ) +#+end_src + +** Org-Roam-Bibtex ([[https://github.com/Zaeph/org-roam-bibtex][link]]) +#+begin_src emacs-lisp + (use-package! org-roam-bibtex + :load-path "~/.config/doom/packages/org-roam-bibtex/" + :config + (org-roam-bibtex-mode) + (setq org-roam-bibtex-preformat-keywords `("=key=" "title" "author" "year")) + + (setq org-roam-bibtex-template + `(("r" "ref" plain (function org-roam-capture--get-point) "" + :file-name "${=key=}" + :head ,(concat "#+TITLE: ${title}\n" + "#+SETUPFILE ./org-notes-setup-file.org\n" + "#+ROAM_KEY: ${ref}\n" + "\n" + "- Tags :: %?\n" + "- Author(s) :: ${author}\n" + "- Year :: ${year}\n" + "\n" + "* Notes :ignore:\n" + ":PROPERTIES:\n" + ":NOTER_DOCUMENT: ../pdfs/${=key=}.pdf\n" + ":END:\n") + :unnarrowed t))) + ) +#+end_src + * LaTeX - https://tex.stackexchange.com/questions/52179/what-is-your-favorite-emacs-and-or-auctex-command-trick - https://tex.stackexchange.com/questions/20843/useful-shortcuts-or-key-bindings-or-predefined-commands-for-emacsauctex @@ -2139,142 +2262,6 @@ Map Functions (bibtex-set-dialect 'BibTeX)) #+end_src -* Helm-Bibtex -** General Config -#+begin_src emacs-lisp - (use-package! helm-bibtex - :init - :config - ;; Bibliography file - (setq bibtex-completion-bibliography "~/Cloud/thesis/ressources/references.bib") - - ;; Directory with all the pdfs - (setq bibtex-completion-library-path "~/Cloud/thesis/ressources/pdfs") - - ;; Directory with notes files - (setq bibtex-completion-notes-path "~/Cloud/thesis/ressources/notes/notes.org") - - (setq bibtex-completion-notes-extension ".org") - - (setq bibtex-completion-pdf-extension '(".pdf" ".djvu")) - - ;; Use "tags" field when looking for bib entries - (setq helm-bibtex-additional-search-fields '(tags)) - - (setq helm-bibtex-full-frame nil) - - ;; Display of bibtex entries with helm - (setq bibtex-completion-display-formats - '((t . "${author:36} ${title:*} ${year:4} ${=type=:7} ${=has-note=:1}"))) - - ;; Special symbols for notes and pdf - (setq bibtex-completion-pdf-symbol "⌘") - (setq bibtex-completion-notes-symbol "✎") - - ;; Template used when creating new Note file - (setq bibtex-completion-notes-template-multiple-files (concat "#+TITLE: ${title}\n" - ":DRAWER:\n" - "#+LATEX_CLASS: biblioreport\n" - "\n" - "#+OPTIONS: toc:nil title:nil\n" - "#+OPTIONS: ':t -:t\n" - "\n" - "#+LATEX_HEADER: \\newcommand{\\refType}{${=type=}}\n" - "#+LATEX_HEADER: \\newcommand{\\refKey}{${=key=}}\n" - "#+LATEX_HEADER: \\newcommand{\\refTitle}{${title}}\n" - "#+LATEX_HEADER: \\newcommand{\\refAuthor}{${author-or-editor}}\n" - "#+LATEX_HEADER: \\newcommand{\\refJournal}{${journal}}\n" - "#+LATEX_HEADER: \\newcommand{\\refYear}{${year}}\n" - "#+LATEX_HEADER: \\newcommand{\\refDoi}{${DOI}}\n" - "#+LATEX_HEADER: \\newcommand{\\refUrl}{${url}}\n" - "#+LATEX_HEADER: \\newcommand{\\refKeywords}{${tags}}\n" - "#+LATEX_HEADER: \\input{config.tex}\n" - "#+LATEX_HEADER: \\graphicspath{{./figs/${=key=}/}}\n" - "# #+TOC: headlines 2\n" - ":END:\n" - "\n" - "#+BEGIN_abstract\n" - "\n" - "#+END_abstract\n" - "\n" - "* ${title} :${=type=}:ignore:\n" - ":PROPERTIES:\n" - ":CUSTOM_ID: ${=key=}\n" - ":AUTHOR: ${author}\n" - ":TYPE: ${=type=}\n" - ":JOURNAL: ${journal}\n" - ":YEAR: ${year}\n" - ":VOLUME: ${volume}\n" - ":PAGES: ${pages}\n" - ":DOI: ${DOI}\n" - ":URL: ${url}\n" - ":NOTER_DOCUMENT: ../pdfs/${=key=}.pdf\n" - ":END:\n" - "\n")) - - (setq bibtex-completion-notes-template-one-file (concat "\n" - "* ${author-abbrev} (${year}): ${title} :${=type=}:ignore:\n" - ":PROPERTIES:\n" - ":CUSTOM_ID: ${=key=}\n" - ":EXPORT_FILE_NAME: ${=key=}\n" - ":EXPORT_TITLE: ${title}\n" - ":AUTHOR: ${author}\n" - ":TYPE: ${=type=}\n" - ":JOURNAL: ${journal}\n" - ":YEAR: ${year}\n" - ":VOLUME: ${volume}\n" - ":PAGES: ${pages}\n" - ":DOI: ${DOI}\n" - ":URL: ${url}\n" - ":NOTER_DOCUMENT: ../pdfs/${=key=}.pdf\n" - ":END:\n" - "\n")) - - ;; Make "Edit notes" the default action - (helm-delete-action-from-source "Edit notes" helm-source-bibtex) - (helm-add-action-to-source "Edit notes" 'helm-bibtex-edit-notes helm-source-bibtex 0) - - (helm-delete-action-from-source "Open PDF Externally" helm-source-bibtex) - (helm-add-action-to-source "Open PDF Externally" 'tdehaeze/open-pdf-externally helm-source-bibtex 1) - ) -#+end_src - -** Open pdf externally -#+begin_src emacs-lisp - (defun tdehaeze/open-pdf-externally (key) - (call-process "zathura" nil 0 nil (nth 0 (-cons-to-list (bibtex-completion-find-pdf key))))) -#+end_src - -** Special Commands -#+begin_src emacs-lisp - (defun helm-bibtex-favorites (&optional arg) - "Search Favorite BibTeX entries" - (interactive "P") - (helm-bibtex arg nil "favorite ")) -#+end_src - -** List all element of the bibliography without pdf associated -#+begin_src emacs-lisp - (defun tdh-list-bib-without-pdf-associated () - (interactive) - (bibtex-completion-init) - (setq candidates (bibtex-completion-candidates)) - - (defun canditate-is-pdf-present (candidate) - (bibtex-completion-find-pdf-in-library (cdr (assoc "=key=" candidate))) - ) - - (setq candidates-without-pdf (remove-if #'canditate-is-pdf-present candidates)) - - (setq candidate-without-pdf-names (mapcar - (lambda (x) (cdr (assoc "title" x))) - candidates-without-pdf)) - - (with-output-to-temp-buffer "*bib-without-pdf*" (princ (string-join candidate-without-pdf-names "\n"))) - (switch-to-buffer-other-window "*bib-without-pdf*") - ) -#+end_src - * Matlab - https://sourceforge.net/projects/matlab-emacs/ @@ -2362,7 +2349,7 @@ Map Functions * Mu4e -** Ressources +** Resources Documentation: - [ ] Mu4e documentation: http://www.djcbsoftware.nl/code/mu/mu4e/index.html#Top - [ ] https://github.com/djcb/mu @@ -2553,20 +2540,6 @@ Choose account label to feed msmtp -a option based on From header in Message buf ) #+end_src -* PDF-Tools -#+begin_src emacs-lisp - (use-package! pdf-tools - :config - (add-hook 'pdf-view-mode-hook (lambda() (linum-mode -1))) - ) -#+end_src - -* Yassnippets -#+begin_src emacs-lisp - (push "~/.config/doom/snippets" yas-snippet-dirs) - (yas-global-mode 1) -#+end_src - * Doom =init.el= :PROPERTIES: :header-args: :tangle ~/.config/doom/init.el