Update with correct LaTeX preamble

.gitattributes

@@ -0,0 +1,3 @@
+*.pdf binary
+*.svg binary
+*.mat binary

preamble.tex

@@ -1,141 +1,16 @@
-\usepackage{float}
+\usepackage[      %
-\usepackage{enumitem}
+    acronym,      % Separate acronyms and glossary
+    toc,          % appear in ToC
+    automake,     % auto-use the makeglossaries command (requires shell-escape)
+    nonumberlist, % don't back reference pages
+    nogroupskip,  % don't group by letter
+    nopostdot     % don't add a dot at the end of each element
+]{glossaries}
 
-\usepackage{layout}
+\usepackage[stylemods=longextra]{glossaries-extra}
 
-\usepackage{caption,tabularx,booktabs}
+\setabbreviationstyle[acronym]{long-short}
-\usepackage{bm}
+\setglossarystyle{long-name-desc}
 
-\usepackage{xpatch} % Recommanded for biblatex
+\makeindex
-\usepackage[        % use biblatex for bibliography
+\makeglossaries
-    backend=biber,  % use biber backend (bibtex replacement) or bibtex
-    style=ieee,     % bib style
-    citestyle=numeric-comp, % bib style
-    hyperref=true,  % activate hyperref support
-    backref=true,   % activate backrefs
-    isbn=false,     % don't show isbn tags
-    url=false,      % don't show url tags
-    doi=false,      % don't show doi tags
-    urldate=long,   % display type for dates
-    maxnames=3,     %
-    minnames=1,     %
-    maxbibnames=5,  %
-    minbibnames=3,  %
-    maxcitenames=2, %
-    mincitenames=1  %
-    ]{biblatex}
-
-\setlength\bibitemsep{1.1\itemsep}
-
-% \renewcommand*{\bibfont}{\footnotesize}
-
-\usepackage{fontawesome}
-
-\usepackage{caption}
-\usepackage{subcaption}
-
-\captionsetup[figure]{labelfont=bf}
-\captionsetup[subfigure]{labelfont=bf}
-\captionsetup[listing]{labelfont=bf}
-\captionsetup[table]{labelfont=bf}
-
-\usepackage{xcolor}
-
-\definecolor{my-blue}{HTML}{6b7adb}
-\definecolor{my-pale-blue}{HTML}{e6e9f9}
-\definecolor{my-red}{HTML}{db6b6b}
-\definecolor{my-pale-red}{HTML}{f9e6e6}
-\definecolor{my-green}{HTML}{6bdbb6}
-\definecolor{my-pale-green}{HTML}{e6f9f3}
-\definecolor{my-yellow}{HTML}{dbd26b}
-\definecolor{my-pale-yellow}{HTML}{f9f7e6}
-\definecolor{my-orange}{HTML}{dba76b}
-\definecolor{my-pale-orange}{HTML}{f9f0e6}
-\definecolor{my-grey}{HTML}{a3a3a3}
-\definecolor{my-pale-grey}{HTML}{f0f0f0}
-\definecolor{my-turq}{HTML}{6bc7db}
-\definecolor{my-pale-turq}{HTML}{e6f6f9}
-
-\usepackage{inconsolata}
-
-\usepackage[newfloat=true, chapter]{minted}
-\usemintedstyle{autumn}
-
-\setminted{frame=lines,breaklines=true,tabsize=4,fontsize=\scriptsize,autogobble=true,labelposition=topline,bgcolor=my-pale-grey}
-\setminted[matlab]{label=Matlab}
-\setminted[latex]{label=LaTeX}
-\setminted[bash]{label=Bash}
-\setminted[python]{label=Python}
-\setminted[text]{label=Results}
-\setminted[md]{label=Org Mode}
-
-\setmintedinline{fontsize=\normalsize,bgcolor=my-pale-grey}
-
-\usepackage[most]{tcolorbox}
-
-\tcbuselibrary{minted}
-
-\newtcolorbox{seealso}{   enhanced,breakable,colback=my-pale-grey,colframe=my-grey,fonttitle=\bfseries,title=See Also}
-\newtcolorbox{hint}{      enhanced,breakable,colback=my-pale-grey,colframe=my-grey,fonttitle=\bfseries,title=Hint}
-\newtcolorbox{definition}{enhanced,breakable,colback=my-pale-red, colframe=my-red, fonttitle=\bfseries,title=Definition}
-\newtcolorbox{important}{ enhanced,breakable,colback=my-pale-red, colframe=my-red, fonttitle=\bfseries,title=Important}
-\newtcolorbox{exampl}[1][]{    enhanced,breakable,colback=my-pale-green,colframe=my-green,fonttitle=\bfseries,title=Example,#1}
-\newtcolorbox{exercice}{  enhanced,breakable,colback=my-pale-yellow,colframe=my-yellow,fonttitle=\bfseries,title=Exercice}
-\newtcolorbox{question}{  enhanced,breakable,colback=my-pale-yellow,colframe=my-yellow,fonttitle=\bfseries,title=Question}
-\newtcolorbox{answer}{    enhanced,breakable,colback=my-pale-turq,colframe=my-turq,fonttitle=\bfseries,title=Answer}
-\newtcolorbox{summary}{   enhanced,breakable,colback=my-pale-blue,colframe=my-blue,fonttitle=\bfseries,title=Summary}
-\newtcolorbox{note}{      enhanced,breakable,colback=my-pale-blue,colframe=my-blue,fonttitle=\bfseries,title=Note}
-\newtcolorbox{caution}{   enhanced,breakable,colback=my-pale-orange,colframe=my-orange,fonttitle=\bfseries,title=Caution}
-\newtcolorbox{warning}{   enhanced,breakable,colback=my-pale-orange,colframe=my-orange,fonttitle=\bfseries,title=Warning}
-
-\newtcolorbox{my-quote}[1]{%
-  colback=my-pale-grey,
-  grow to right by=-10mm,
-  grow to left by=-10mm,
-  boxrule=0pt,
-  boxsep=0pt,
-  breakable,
-  enhanced jigsaw,
-  borderline west={4pt}{0pt}{my-grey}}
-
-\renewenvironment{quote}{\begin{my-quote}}{\end{my-quote}}
-
-\newtcolorbox{my-verse}[1]{%
-  colback=my-pale-grey,
-  grow to right by=-10mm,
-  grow to left by=-10mm,
-  boxrule=0pt,
-  boxsep=0pt,
-  breakable,
-  enhanced jigsaw,
-  borderline west={4pt}{0pt}{my-grey}}
-
-\renewenvironment{verse}{\begin{my-verse}}{\end{my-verse}}
-
-\usepackage{environ}% http://ctan.org/pkg/environ
-\NewEnviron{aside}{%
-  \marginpar{\BODY}
-}
-
-\renewenvironment{verbatim}{\VerbatimEnvironment\begin{minted}[]{text}}{\end{minted}}
-
-\usepackage{soul}
-\sethlcolor{my-pale-grey}
-
-\let\OldTexttt\texttt
-\renewcommand{\texttt}[1]{{\ttfamily\hl{\mbox{\,#1\,}}}}
-
-\makeatletter
-\preto\Gin@extensions{png,}
-\DeclareGraphicsRule{.png}{pdf}{.pdf}{\noexpand\Gin@base.pdf}
-\preto\Gin@extensions{gif,}
-\DeclareGraphicsRule{.gif}{png}{.png}{\noexpand\Gin@base.png}
-\makeatother
-
-\usepackage{hyperref}
-\hypersetup{
-  colorlinks = true,
-  allcolors = my-blue
-}
-
-\usepackage{hypcap}

preamble_extra.tex

@@ -0,0 +1,134 @@
+\usepackage{float}
+\usepackage{enumitem}
+
+\usepackage{caption,tabularx,booktabs}
+\usepackage{bm}
+
+\usepackage{xpatch} % Recommanded for biblatex
+\usepackage[        % use biblatex for bibliography
+    backend=biber,  % use biber backend (bibtex replacement) or bibtex
+    style=ieee,     % bib style
+    hyperref=true,  % activate hyperref support
+    backref=true,   % activate backrefs
+    isbn=false,     % don't show isbn tags
+    url=false,      % don't show url tags
+    doi=false,      % don't show doi tags
+    urldate=long,   % display type for dates
+    maxnames=3,     %
+    minnames=1,     %
+    maxbibnames=5,  %
+    minbibnames=3,  %
+    maxcitenames=2, %
+    mincitenames=1  %
+    ]{biblatex}
+
+\setlength\bibitemsep{1.1\itemsep}
+
+\usepackage{caption}
+\usepackage{subcaption}
+
+\captionsetup[figure]{labelfont=bf}
+\captionsetup[subfigure]{labelfont=bf}
+\captionsetup[listing]{labelfont=bf}
+\captionsetup[table]{labelfont=bf}
+
+\usepackage{xcolor}
+
+\definecolor{my-blue}{HTML}{6b7adb}
+\definecolor{my-pale-blue}{HTML}{e6e9f9}
+\definecolor{my-red}{HTML}{db6b6b}
+\definecolor{my-pale-red}{HTML}{f9e6e6}
+\definecolor{my-green}{HTML}{6bdbb6}
+\definecolor{my-pale-green}{HTML}{e6f9f3}
+\definecolor{my-yellow}{HTML}{dbd26b}
+\definecolor{my-pale-yellow}{HTML}{f9f7e6}
+\definecolor{my-orange}{HTML}{dba76b}
+\definecolor{my-pale-orange}{HTML}{f9f0e6}
+\definecolor{my-grey}{HTML}{a3a3a3}
+\definecolor{my-pale-grey}{HTML}{f0f0f0}
+\definecolor{my-turq}{HTML}{6bc7db}
+\definecolor{my-pale-turq}{HTML}{e6f6f9}
+
+\usepackage{inconsolata}
+
+\usepackage[newfloat=true, chapter]{minted}
+\usemintedstyle{autumn}
+
+\setminted{frame=lines,breaklines=true,tabsize=4,fontsize=\scriptsize,autogobble=true,labelposition=topline,bgcolor=my-pale-grey}
+\setminted[matlab]{label=Matlab}
+\setminted[latex]{label=LaTeX}
+\setminted[bash]{label=Bash}
+\setminted[python]{label=Python}
+\setminted[text]{label=Results}
+\setminted[md]{label=Org Mode}
+
+\setmintedinline{fontsize=\normalsize,bgcolor=my-pale-grey}
+
+\usepackage[most]{tcolorbox}
+
+\tcbuselibrary{minted}
+
+\newtcolorbox{seealso}{   enhanced,breakable,colback=my-pale-grey,colframe=my-grey,fonttitle=\bfseries,title=See Also}
+\newtcolorbox{hint}{      enhanced,breakable,colback=my-pale-grey,colframe=my-grey,fonttitle=\bfseries,title=Hint}
+\newtcolorbox{definition}{enhanced,breakable,colback=my-pale-red, colframe=my-red, fonttitle=\bfseries,title=Definition}
+\newtcolorbox{important}{ enhanced,breakable,colback=my-pale-red, colframe=my-red, fonttitle=\bfseries,title=Important}
+\newtcolorbox{exampl}[1][]{    enhanced,breakable,colback=my-pale-green,colframe=my-green,fonttitle=\bfseries,title=Example,#1}
+\newtcolorbox{exercice}{  enhanced,breakable,colback=my-pale-yellow,colframe=my-yellow,fonttitle=\bfseries,title=Exercice}
+\newtcolorbox{question}{  enhanced,breakable,colback=my-pale-yellow,colframe=my-yellow,fonttitle=\bfseries,title=Question}
+\newtcolorbox{answer}{    enhanced,breakable,colback=my-pale-turq,colframe=my-turq,fonttitle=\bfseries,title=Answer}
+\newtcolorbox{summary}{   enhanced,breakable,colback=my-pale-blue,colframe=my-blue,fonttitle=\bfseries,title=Summary}
+\newtcolorbox{note}{      enhanced,breakable,colback=my-pale-blue,colframe=my-blue,fonttitle=\bfseries,title=Note}
+\newtcolorbox{caution}{   enhanced,breakable,colback=my-pale-orange,colframe=my-orange,fonttitle=\bfseries,title=Caution}
+\newtcolorbox{warning}{   enhanced,breakable,colback=my-pale-orange,colframe=my-orange,fonttitle=\bfseries,title=Warning}
+
+\newtcolorbox{my-quote}[1]{%
+  colback=my-pale-grey,
+  grow to right by=-10mm,
+  grow to left by=-10mm,
+  boxrule=0pt,
+  boxsep=0pt,
+  breakable,
+  enhanced jigsaw,
+  borderline west={4pt}{0pt}{my-grey}}
+
+\renewenvironment{quote}{\begin{my-quote}}{\end{my-quote}}
+
+\newtcolorbox{my-verse}[1]{%
+  colback=my-pale-grey,
+  grow to right by=-10mm,
+  grow to left by=-10mm,
+  boxrule=0pt,
+  boxsep=0pt,
+  breakable,
+  enhanced jigsaw,
+  borderline west={4pt}{0pt}{my-grey}}
+
+\renewenvironment{verse}{\begin{my-verse}}{\end{my-verse}}
+
+\usepackage{environ}% http://ctan.org/pkg/environ
+\NewEnviron{aside}{%
+  \marginpar{\BODY}
+}
+
+\renewenvironment{verbatim}{\VerbatimEnvironment\begin{minted}[]{text}}{\end{minted}}
+
+\usepackage{soul}
+\sethlcolor{my-pale-grey}
+
+\let\OldTexttt\texttt
+\renewcommand{\texttt}[1]{{\ttfamily\hl{\mbox{\,#1\,}}}}
+
+\makeatletter
+\preto\Gin@extensions{png,}
+\DeclareGraphicsRule{.png}{pdf}{.pdf}{\noexpand\Gin@base.pdf}
+\preto\Gin@extensions{gif,}
+\DeclareGraphicsRule{.gif}{png}{.png}{\noexpand\Gin@base.png}
+\makeatother
+
+\usepackage{hyperref}
+\hypersetup{
+  colorlinks = true,
+  allcolors = my-blue
+}
+
+\usepackage{hypcap}

test-bench-flexible-joints.org

@@ -15,7 +15,8 @@
 
 #+LaTeX_CLASS: scrreprt
 #+LaTeX_CLASS_OPTIONS: [a4paper, 10pt, DIV=12, parskip=full, bibliography=totoc]
-#+LaTeX_HEADER_EXTRA: \input{preamble.tex}
+#+LATEX_HEADER: \input{preamble.tex}
+#+LATEX_HEADER_EXTRA: \input{preamble_extra.tex}
 #+LATEX_HEADER_EXTRA: \bibliography{test-bench-flexible-joints.bib}
 
 #+BIND: org-latex-bib-compiler "biber"
@@ -44,12 +45,6 @@
 #+PROPERTY: header-args:latex+ :post pdf2svg(file=*this*, ext="png")
 :END:
 
-#+begin_export html
-  <hr>
-  <p>This report is also available as a <a href="./test-bench-flexible-joints.pdf">pdf</a>.</p>
-  <hr>
-#+end_export
-
 #+latex: \clearpage
 
 * Build                                                             :noexport:

test-bench-flexible-joints.tex

@@ -1,8 +1,9 @@
-% Created 2024-04-30 Tue 22:20
+% Created 2024-11-08 Fri 17:20
 % Intended LaTeX compiler: pdflatex
 \documentclass[a4paper, 10pt, DIV=12, parskip=full, bibliography=totoc]{scrreprt}
 
 \input{preamble.tex}
+\input{preamble_extra.tex}
 \bibliography{test-bench-flexible-joints.bib}
 \author{Dehaeze Thomas}
 \date{\today}
@@ -12,7 +13,7 @@
  pdftitle={Flexible Joints - Test Bench},
  pdfkeywords={},
  pdfsubject={},
- pdfcreator={Emacs 29.3 (Org mode 9.6)}, 
+ pdfcreator={Emacs 29.4 (Org mode 9.6)}, 
  pdflang={English}}
 \usepackage{biblatex}