Update Matlab tangled files

matlab/index.org

@@ -44,10 +44,10 @@ The matlab code is accessible on [[https://zenodo.org/record/3894343][Zonodo]] a
 To run the Matlab code, go in the =matlab= directory and run the following Matlab files corresponding to each section.
 
 #+caption: Paper's sections and corresponding Matlab files
-| Sections                           | Matlab File                |
-|------------------------------------+----------------------------|
+| Sections                           | Matlab File              |
+|------------------------------------+--------------------------|
 | Section [[sec:system_description]]     | =s1_system_description.m=  |
-| Section [[sec:iff_pure_int]]           | =s2_iff_pure_int.m=        |
+| Section [[sec:iff_pure_int]]       | =s2_iff_pure_int.m=        |
 | Section [[sec:iff_pseudo_int]]         | =s3_iff_hpf.m=             |
 | Section [[sec:iff_parallel_stiffness]] | =s4_iff_kp.m=              |
 | Section [[sec:comparison]]             | =s5_act_damp_comparison.m= |
@@ -60,16 +60,19 @@ To run the Matlab code, go in the =matlab= directory and run the following Matla
 
 ** Matlab Init                                              :noexport:ignore:
 #+begin_src matlab :tangle no :exports none :results silent :noweb yes :var current_dir=(file-name-directory buffer-file-name)
-  <<matlab-dir>>
+<<matlab-dir>>
 #+end_src
 
 #+begin_src matlab :exports none :results silent :noweb yes
-  <<matlab-init>>
+<<matlab-init>>
 #+end_src
 
-#+begin_src matlab :tangle no
-  addpath('./matlab/');
-  addpath('./src/');
+#+begin_src matlab :tangle no :noweb yes
+<<m-init-path>>
+#+end_src
+
+#+begin_src matlab :eval no :noweb yes
+<<m-init-path-tangle>>
 #+end_src
 
 ** System description
@@ -440,16 +443,19 @@ Two identical controllers $K_F$ are used to feedback each of the sensed force to
 
 ** Matlab Init                                              :noexport:ignore:
 #+begin_src matlab :tangle no :exports none :results silent :noweb yes :var current_dir=(file-name-directory buffer-file-name)
-  <<matlab-dir>>
+<<matlab-dir>>
 #+end_src
 
 #+begin_src matlab :exports none :results silent :noweb yes
-  <<matlab-init>>
+<<matlab-init>>
 #+end_src
 
-#+begin_src matlab :tangle no
-  addpath('./matlab/');
-  addpath('./src/');
+#+begin_src matlab :tangle no :noweb yes
+<<m-init-path>>
+#+end_src
+
+#+begin_src matlab :eval no :noweb yes
+<<m-init-path-tangle>>
 #+end_src
 
 ** Plant Parameters
@@ -764,16 +770,19 @@ It is shown that for non-null rotating speed, one pole is bound to the right-hal
 
 ** Matlab Init                                              :noexport:ignore:
 #+begin_src matlab :tangle no :exports none :results silent :noweb yes :var current_dir=(file-name-directory buffer-file-name)
-  <<matlab-dir>>
+<<matlab-dir>>
 #+end_src
 
 #+begin_src matlab :exports none :results silent :noweb yes
-  <<matlab-init>>
+<<matlab-init>>
 #+end_src
 
-#+begin_src matlab :tangle no
-  addpath('./matlab/');
-  addpath('./src/');
+#+begin_src matlab :tangle no :noweb yes
+<<m-init-path>>
+#+end_src
+
+#+begin_src matlab :eval no :noweb yes
+<<m-init-path-tangle>>
 #+end_src
 
 ** Plant Parameters
@@ -1160,16 +1169,19 @@ To find the optimum, the gain that maximize the simultaneous damping of the mode
 
 ** Matlab Init                                              :noexport:ignore:
 #+begin_src matlab :tangle no :exports none :results silent :noweb yes :var current_dir=(file-name-directory buffer-file-name)
-  <<matlab-dir>>
+<<matlab-dir>>
 #+end_src
 
 #+begin_src matlab :exports none :results silent :noweb yes
-  <<matlab-init>>
+<<matlab-init>>
 #+end_src
 
-#+begin_src matlab :tangle no
-  addpath('./matlab/');
-  addpath('./src/');
+#+begin_src matlab :tangle no :noweb yes
+<<m-init-path>>
+#+end_src
+
+#+begin_src matlab :eval no :noweb yes
+<<m-init-path-tangle>>
 #+end_src
 
 ** Schematic
@@ -1761,16 +1773,19 @@ These two methods are now compared in terms of added damping, closed-loop compli
 
 ** Matlab Init                                             :noexport:ignore:
 #+begin_src matlab :tangle no :exports none :results silent :noweb yes :var current_dir=(file-name-directory buffer-file-name)
-  <<matlab-dir>>
+<<matlab-dir>>
 #+end_src
 
 #+begin_src matlab :exports none :results silent :noweb yes
-  <<matlab-init>>
+<<matlab-init>>
 #+end_src
 
-#+begin_src matlab :tangle no
-  addpath('./matlab/');
-  addpath('./src/');
+#+begin_src matlab :tangle no :noweb yes
+<<m-init-path>>
+#+end_src
+
+#+begin_src matlab :eval no :noweb yes
+<<m-init-path-tangle>>
 #+end_src
 
 ** Plant Parameters
@@ -2143,10 +2158,23 @@ Critical Damping corresponds to to $\xi = 1$, and thus:
 #+latex: \printbibliography
 bibliography:ref.bib
 
+* Helping Functions                                                 :noexport:
+** Initialize Path
+#+NAME: m-init-path
+#+BEGIN_SRC matlab
+addpath('./matlab/');     % Path for scripts
+addpath('./matlab/src/'); % Path for functions
+#+END_SRC
+
+#+NAME: m-init-path-tangle
+#+BEGIN_SRC matlab
+addpath('./src/'); % Path for functions
+#+END_SRC
+
 * Functions                                                         :noexport:
 ** Sort Poles for the Root Locus
 :PROPERTIES:
-:header-args:matlab+: :tangle src/rootLocusPolesSorted.m
+:header-args:matlab+: :tangle matlab/src/rootLocusPolesSorted.m
 :header-args:matlab+: :comments none :mkdirp yes :eval no
 :END:
 <<sec:rootLocusPolesSorted>>
@@ -2291,7 +2319,7 @@ This Matlab function is accessible [[file:src/rootLocusPolesSorted.m][here]].
 #+end_src
 
 ** =computeSimultaneousDamping=
-#+begin_src matlab :tangle src/computeSimultaneousDamping.m
+#+begin_src matlab :tangle matlab/src/computeSimultaneousDamping.m
   function [xi_min] = computeSimultaneousDamping(g, G, K)
       [w, xi] = damp(minreal(feedback(G, g*K)));
       xi_min = 1/min(xi);