diff --git a/mat/conf_log.mat b/mat/conf_log.mat
index c7cb1fb..ec0c7b7 100644
Binary files a/mat/conf_log.mat and b/mat/conf_log.mat differ
diff --git a/mat/conf_simscape.mat b/mat/conf_simscape.mat
index 88fcee1..825cf1c 100644
Binary files a/mat/conf_simscape.mat and b/mat/conf_simscape.mat differ
diff --git a/mat/controller.mat b/mat/controller.mat
index 49d28a8..1f85ef8 100644
Binary files a/mat/controller.mat and b/mat/controller.mat differ
diff --git a/mat/nass_disturbances.mat b/mat/nass_disturbances.mat
index 192ca75..354d356 100644
Binary files a/mat/nass_disturbances.mat and b/mat/nass_disturbances.mat differ
diff --git a/mat/nass_references.mat b/mat/nass_references.mat
index fae9a0f..e9904de 100644
Binary files a/mat/nass_references.mat and b/mat/nass_references.mat differ
diff --git a/mat/stages.mat b/mat/stages.mat
index c931f63..c4221a6 100644
Binary files a/mat/stages.mat and b/mat/stages.mat differ
diff --git a/mat/tomo_exp_hac_dvf.mat b/mat/tomo_exp_hac_dvf.mat
index 75f366f..655226f 100644
Binary files a/mat/tomo_exp_hac_dvf.mat and b/mat/tomo_exp_hac_dvf.mat differ
diff --git a/org/experiments.org b/org/experiments.org
index 4245b76..87e8ad7 100644
--- a/org/experiments.org
+++ b/org/experiments.org
@@ -325,19 +325,19 @@ And we save the obtained data.
   figure;
   ax1 = subplot(2, 3, 1);
   hold on;
-  plot(scans_rz_align_dist.Em.Eg.Time, scans_rz_align_dist.Em.Eg.Data(:, 1))
+  plot(scans_rz_align_dist.Em.En.Time, scans_rz_align_dist.Em.En.Data(:, 1))
   hold off;
   ylabel('Displacement $\epsilon_x$ [m]');
 
   ax2 = subplot(2, 3, 2);
   hold on;
-  plot(scans_rz_align_dist.Em.Eg.Time, scans_rz_align_dist.Em.Eg.Data(:, 2))
+  plot(scans_rz_align_dist.Em.En.Time, scans_rz_align_dist.Em.En.Data(:, 2))
   hold off;
   ylabel('Displacement $\epsilon_y$ [m]');
 
   ax3 = subplot(2, 3, 3);
   hold on;
-  plot(scans_rz_align_dist.Em.Eg.Time, scans_rz_align_dist.Em.Eg.Data(:, 3))
+  plot(scans_rz_align_dist.Em.En.Time, scans_rz_align_dist.Em.En.Data(:, 3))
   hold off;
   ylabel('Displacement $\epsilon_z$ [m]');
 
diff --git a/org/optimal_stiffness_control.org b/org/optimal_stiffness_control.org
index b74c1a7..76c4092 100644
--- a/org/optimal_stiffness_control.org
+++ b/org/optimal_stiffness_control.org
@@ -1429,6 +1429,7 @@ exportFig('figs/opt_stiff_hac_dvf_L_act_stroke.pdf', 'width', 'full', 'height',
 #+end_important
 
 * Further More complex simulations
+** Introduction                                                      :ignore:
 ** Simulation with Micro-Hexapod Offset
 *** Simulation
 The micro-hexapod is inducing a 10mm offset of the sample center of mass with the rotation axis.
diff --git a/org/uncertainty_payload.org b/org/uncertainty_payload.org
index eafc5b3..b951bc6 100644
--- a/org/uncertainty_payload.org
+++ b/org/uncertainty_payload.org
@@ -427,7 +427,7 @@ And we obtain
               &= \frac{m^\prime s^2 + c^\prime s + k^\prime}{(ms^2 + cs + k) (m^\prime s^2 + c^\prime s + k^\prime) + m^\prime s^2 (c^\prime s + k)}
 \end{align*}
 
-Which is the same transfer function that was obtained in section [[sec:introductory_example]] (Eq. [[eq:plant_simple_system]]).
+Which is the same transfer function that was obtained in section [[sec:introductory_example]] (Eq. eqref:eq:plant_simple_system).
 
 The impedance of the mass-spring-damper system is shown in Figure [[fig:example_impedance_mass_spring_damper]].
 - Before the resonance frequency $\omega_0^\prime$, the impedance follows the mass line
diff --git a/org/uncertainty_support.org b/org/uncertainty_support.org
index 3f1da9e..504e1c1 100644
--- a/org/uncertainty_support.org
+++ b/org/uncertainty_support.org
@@ -392,7 +392,7 @@ In order to verify that the formula is correct, let's take the same mass-spring-
 
 And we obtain
 \[ \frac{x}{F} = \frac{m^\prime s^2 + c^\prime s + k^\prime}{(ms^2 + cs + k)(m^\prime s^2 + c^\prime s + k^\prime) + ms^2(cs + k)} \]
-Which is the same transfer function that was obtained in section [[sec:introductory_example]] (Eq. [[eq:plant_simple_system]]).
+Which is the same transfer function that was obtained in section [[sec:introductory_example]] (Eq. eqref:eq:plant_simple_system).
 
 ** Matlab Init                                              :noexport:ignore:
 #+begin_src matlab :tangle no :exports none :results silent :noweb yes :var current_dir=(file-name-directory buffer-file-name)
diff --git a/readme.org b/readme.org
index 4a06be3..2eefd7d 100644
--- a/readme.org
+++ b/readme.org
@@ -4,21 +4,3 @@
 #+OPTIONS: num:nil toc:nil todo:nil
 
 The goal of this project is to study the Nano-Active-Stabilization-System concept using Matlab/Simscape.
-
-#+begin_src emacs-lisp :tangle no
-  (setq org-publish-project-alist
-        '(("nass-simscape"
-           :base-directory "~/Cloud/thesis/matlab/nass-simscape/org/"
-           :base-extension "org"
-           :publishing-directory "~/Cloud/thesis/matlab/nass-simscape/docs/"
-           :author "Dehaeze Thomas"
-           :email "dehaeze.thomas@gmail.com/"
-           :recursive nil
-           :publishing-function org-html-publish-to-html
-           :auto-preamble t
-           :auto-sitemap nil
-           :with-todo-keywords nil
-           :html-wrap-src-lines nil
-           :table-of-contents nil)
-          ))
-#+end_src