From ee744ab2060b158862a657694e340fb8a40c30d3 Mon Sep 17 00:00:00 2001
From: Thomas Dehaeze <dehaeze.thomas@gmail.com>
Date: Thu, 16 May 2019 21:39:04 +0200
Subject: [PATCH] Reworks the way spacemacs config is organized

---
 dotfiles/spacemacs.org | 372 ++++++++++++++++++++---------------------
 1 file changed, 184 insertions(+), 188 deletions(-)

diff --git a/dotfiles/spacemacs.org b/dotfiles/spacemacs.org
index 9d7cec9..b592297 100644
--- a/dotfiles/spacemacs.org
+++ b/dotfiles/spacemacs.org
@@ -1,22 +1,23 @@
 #+TITLE: Spacemacs configuration
-#+STARTUP: headlines
-#+STARTUP: nohideblocks
-#+STARTUP: noindent
 #+PROPERTY: header-args:emacs-lisp :comments link :results silent
 
 * User Init
+  :PROPERTIES:
+  :header-args:emacs-lisp+: :tangle ~/.spacemacs.d/user-init.el
+  :END:
+
 ** Melpa
-#+BEGIN_SRC emacs-lisp
+#+BEGIN_SRC emacs-lisp :tangle no
   (add-to-list 'package-archives '("melpa" . "http://www.mirrorservice.org/sites/melpa.org/packages/"))
 #+END_SRC
 
 ** Ispell
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-init.el
+#+BEGIN_SRC emacs-lisp
   (setq ispell-program-name "/usr/bin/aspell")
 #+END_SRC
 
 ** Org latex fragment
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-init.el
+#+BEGIN_SRC emacs-lisp
   (defvar kk/org-latex-fragment-last nil
     "Holds last fragment/environment you were on.")
 
@@ -99,13 +100,18 @@
 #+END_SRC
 
 ** Default Browser
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-init.el
+#+BEGIN_SRC emacs-lisp
   (setq browse-url-browser-function 'browse-url-generic
         browse-url-generic-program "qutebrowser")
 #+END_SRC
 
+* User-Config
+  :PROPERTIES:
+  :header-args:emacs-lisp+: :tangle ~/.spacemacs.d/user-config.el
+  :END:
+
 ** Others
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   ;; Line Wrapping
   (spacemacs/toggle-truncate-lines-on)
 
@@ -127,55 +133,54 @@
 #+END_SRC
 
 ** Windows Management
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   (global-set-key (kbd "<C-up>") 'shrink-window)
   (global-set-key (kbd "<C-down>") 'enlarge-window)
   (global-set-key (kbd "<C-left>") 'shrink-window-horizontally)
   (global-set-key (kbd "<C-right>") 'enlarge-window-horizontally)
 #+END_SRC
 ** Lockfiles
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   (setq create-lockfiles nil)
 #+end_src
 
 ** Autosave
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   (setq backup-directory-alist `(("." . "~/.saves")))
   (setq backup-by-copying t)
 #+END_SRC
 
-* Path
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+** Path
+#+BEGIN_SRC emacs-lisp
   (setq thesis-base-path (expand-file-name "~/MEGA/These"))
   (setq dropbox-base-path (expand-file-name "~/Dropbox"))
 #+END_SRC
 
-* Magit
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+** Magit
+#+BEGIN_SRC emacs-lisp
   (setenv "GIT_ASKPASS" "git-gui--askpass")
 
   (setq magit-diff-refine-hunk 'all)
 #+END_SRC
 
-* User informations
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+** User informations
+#+BEGIN_SRC emacs-lisp
   ;; Used to the \author for LaTeX export
   (setq user-full-name "Thomas Dehaeze")
   ;; Used to set \email for LaTeX export
   (setq user-mail-address "dehaeze.thomas@gmail.com")
 #+END_SRC
 
-* Alerts
 ** Change default alert backend
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   (setq alert-default-style 'libnotify)
 #+END_SRC
 
-* LaTeX
+** LaTeX
 - https://tex.stackexchange.com/questions/52179/what-is-your-favorite-emacs-and-or-auctex-command-trick
 - https://tex.stackexchange.com/questions/20843/useful-shortcuts-or-key-bindings-or-predefined-commands-for-emacsauctex
-** Basic LaTeX configuration
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Basic LaTeX configuration
+#+BEGIN_SRC emacs-lisp
   (defun latex/clean ()
     "Clean LaTeX output using latexmk"
     (interactive)
@@ -191,13 +196,13 @@
   (add-hook 'TeX-mode-hook #'TeX-fold-mode)
 #+END_SRC
 
-** Master file
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Master file
+#+BEGIN_SRC emacs-lisp
   (setq-default TeX-master nil)
 #+END_SRC
 
-** Pdf Viewer
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Pdf Viewer
+#+BEGIN_SRC emacs-lisp
   (setq TeX-view-program-selection '((output-pdf "Zathura")))
   (setq TeX-source-correlate-mode t)
   (setq TeX-source-correlate-start-server t)
@@ -206,9 +211,9 @@
         '(("PDF Tools" TeX-pdf-tools-sync-view)))
 #+END_SRC
 
-** Helm-Bibtex
-*** TODO General Config
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Helm-Bibtex
+**** General Config
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'helm-bibtex
     ;; Use "tags" field when looking for bib entries
     (setq helm-bibtex-additional-search-fields '(keywords))
@@ -283,8 +288,8 @@
     )
 #+END_SRC
 
-*** Open pdf externally
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+**** Open pdf externally
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'helm-bibtex
     (defun tdehaeze/open-pdf-externally (key)
       (call-process "zathura" nil 0 nil (nth 0 (-cons-to-list (bibtex-completion-find-pdf key)))))
@@ -295,40 +300,40 @@
     )
 #+END_SRC
 
-*** Special Commands
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+**** Special Commands
+#+BEGIN_SRC emacs-lisp
   (defun helm-bibtex-favorites (&optional arg)
     "Search Favorite BibTeX entries"
     (interactive "P")
     (helm-bibtex arg nil "favorite "))
 #+END_SRC
-* Auto Complete
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+** Auto Complete
+#+BEGIN_SRC emacs-lisp
   (global-company-mode)
 #+END_SRC
 
-* Yas Snippets
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+** Yas Snippets
+#+BEGIN_SRC emacs-lisp
   (setq yas-indent-line "fixed")
 #+END_SRC
 
-* Org-Mode
+** Org-Mode
 - http://cachestocaches.com/2016/9/my-workflow-org-agenda/
 - http://doc.norang.ca/org-mode.html#TodoKeywords
 - https://emacs.cafe/emacs/orgmode/gtd/2017/06/30/orgmode-gtd.html
 
-** Org Tagging
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Org Tagging
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     ;; Tags with fast selection keys
     (setq org-tag-alist (quote (("@christophe" . ?c)
                                 ("@muriel" . ?m))))
     )
 #+END_SRC
-** Org Gcal
+*** Org Gcal
 - https://cestlaz.github.io/posts/using-emacs-26-gcal/#.WIqBud9vGAk
 
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     (setq org-gcal-client-id "396102378658-dcmbcmrnthbe925519otsjbd921otq0v.apps.googleusercontent.com"
         org-gcal-client-secret "4M5PWrbhQjwYEMXGK85lDYX9"
@@ -340,15 +345,15 @@
     )
 #+END_SRC
 
-** Org Refile
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Org Refile
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     (setq org-refile-targets '((org-agenda-files . (:maxlevel . 6))))
   )
 #+END_SRC
-** Org Todos
+*** Org Todos
 http://sachachua.com/blog/2014/04/thinking-todo-keywords/
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     ;; Tags with fast selection keys
     (setq org-todo-keywords '(
@@ -377,9 +382,9 @@ http://sachachua.com/blog/2014/04/thinking-todo-keywords/
             ("EXAM" . (:foreground "#98971a" :weight bold)))) ;; green
     )
 #+END_SRC
-** Org Agenda
-*** General configuration
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Org Agenda
+**** General configuration
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     ;; File to save todo items
     (setq org-agenda-files (list (format "%s/%s" thesis-base-path "TODOs/")
@@ -408,9 +413,9 @@ http://sachachua.com/blog/2014/04/thinking-todo-keywords/
     )
   )
 #+END_SRC
-*** Org Agenda Custom Views
+**** Org Agenda Custom Views
 https://blog.aaronbieber.com/2016/09/24/an-agenda-for-life-with-org-mode.html
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     (defun tdehaeze/org-agenda-skip-scheduled ()
       (org-agenda-skip-entry-if 'scheduled 'deadline 'regexp "\n]+>"))
@@ -438,13 +443,13 @@ https://blog.aaronbieber.com/2016/09/24/an-agenda-for-life-with-org-mode.html
           )
     )
 #+END_SRC
-*** TODO Add Custom Views for the bibliography
+**** TODO Add Custom Views for the bibliography
 - Things reading (BOOKMARS)
 - Things to read
 - etc...
-** Org Notification based on calendar event
+*** Org Notification based on calendar event
 https://emacs.stackexchange.com/questions/3844/good-methods-for-setting-up-alarms-audio-visual-triggered-by-org-mode-events
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     (setq appt-message-warning-time 5)
     (defun my-org-agenda-to-appt ()
@@ -466,7 +471,7 @@ https://emacs.stackexchange.com/questions/3844/good-methods-for-setting-up-alarm
     )
 #+END_SRC
 
-*** appt-notification script
+**** appt-notification script
   :PROPERTIES:
   :header-args:  :tangle ~/bin/appt-notification
   :header-args+: :comments none :mkdirp yes
@@ -479,8 +484,8 @@ https://emacs.stackexchange.com/questions/3844/good-methods-for-setting-up-alarm
   dunstify --replace=85401 "Event in $TIME minutes" "$MSG"
 #+end_src
 
-** Org Structure Template
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Org Structure Template
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     (setq org-structure-template-alist
           '(("a" . "export ascii")
@@ -497,8 +502,8 @@ https://emacs.stackexchange.com/questions/3844/good-methods-for-setting-up-alarm
     )
 #+END_SRC
 
-** Org Capture
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Org Capture
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     (setq org-directory "~/MEGA/These/TODOs/")
     (setq org-default-notes-file "~/MEGA/These/TODOs/refile.org")
@@ -542,10 +547,10 @@ https://emacs.stackexchange.com/questions/3844/good-methods-for-setting-up-alarm
     )
 #+END_SRC
 
-** TODO Org Publish
+*** TODO Org Publish
 https://orgmode.org/worg/org-tutorials/org-publish-html-tutorial.html
 
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     (setq org-publish-project-alist
           '(
@@ -570,9 +575,9 @@ https://orgmode.org/worg/org-tutorials/org-publish-html-tutorial.html
     )
 #+END_SRC
 
-** Org Babel
-*** Main configuration
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Org Babel
+**** Main configuration
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     ;; Don't ask for confirmation when evalutating latex blocs
     (defun my-org-confirm-babel-evaluate (lang body)
@@ -588,15 +593,15 @@ https://orgmode.org/worg/org-tutorials/org-publish-html-tutorial.html
     )
 #+END_SRC
 
-*** Library of Babel
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+**** Library of Babel
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     (org-babel-lob-ingest "~/MEGA/These/org-mode/org-babel-tutorial/org-babel-library.org")
   )
 #+END_SRC
 
-*** Matlab
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+**** Matlab
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     (setq org-babel-matlab-shell-command "/usr/local/bin/matlab -nodesktop -nosplash")
 
@@ -628,21 +633,21 @@ https://orgmode.org/worg/org-tutorials/org-publish-html-tutorial.html
     )
 #+end_src
 
-*** Asynchronous execution
+**** Asynchronous execution
 https://github.com/astahlman/ob-async
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   (require 'ob-async)
 #+end_src
 
-*** Theme
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+**** Theme
+#+BEGIN_SRC emacs-lisp
   (require 'color)
   (set-face-attribute 'org-block nil :background (color-darken-name (face-attribute 'default :background) 3))
 #+end_src
 
-** Org Export
-*** Basic
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Org Export
+**** Basic
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     ;; How many levels of headline to export
     (setq org-export-headline-levels 4)
@@ -657,18 +662,18 @@ https://github.com/astahlman/ob-async
     (ox-extras-activate '(ignore-headlines))
   )
 #+END_SRC
-*** Ox Latex Subfigure package
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+**** Ox Latex Subfigure package
+#+BEGIN_SRC emacs-lisp
   (use-package ox-latex-subfigure
     :init
     (setq org-latex-prefer-user-labels t)
     :config (require 'ox-latex-subfigure))
 #+END_SRC
 
-*** Clear page before heading
+**** Clear page before heading
 https://emacs.stackexchange.com/questions/30575/adding-latex-newpage-before-a-heading/30892
 
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     (with-eval-after-load 'ox-latex
       (defun org/get-headline-string-element  (headline backend info)
@@ -685,24 +690,24 @@ https://emacs.stackexchange.com/questions/30575/adding-latex-newpage-before-a-he
                    'org/ensure-latex-clearpage)
       ))
 #+END_SRC
-*** TODO HTML Export
-**** Export with css class instead of inline css
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+**** TODO HTML Export
+***** Export with css class instead of inline css
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     (setq org-html-htmlize-output-type 'css)
     )
 #+END_SRC
 
-**** TODO MP4 movies
-#+BEGIN_SRC emacs-lisp
+***** TODO MP4 movies
+#+BEGIN_SRC emacs-lisp :tangle no
   (with-eval-after-load 'org
     (setq org-html-html5-fancy t)
     (setq org-html-doctype "xhtml-strict")
     )
 #+END_SRC
 
-**** TODO MathJax with SIunix
-#+BEGIN_SRC emacs-lisp
+***** TODO MathJax with SIunix
+#+BEGIN_SRC emacs-lisp :tangle no
   (with-eval-after-load 'org
     (setq org-html-mathjax-template
           "<script type=\"text/x-mathjax-config\">
@@ -736,9 +741,9 @@ https://emacs.stackexchange.com/questions/30575/adding-latex-newpage-before-a-he
     )
 #+END_SRC
 
-** Org LaTeX
-*** LaTeX Classes
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Org LaTeX
+**** LaTeX Classes
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     (with-eval-after-load 'ox-latex
       ;; Custom classes to use when exporting to latex
@@ -791,8 +796,8 @@ https://emacs.stackexchange.com/questions/30575/adding-latex-newpage-before-a-he
     )
 #+END_SRC
 
-*** Basic
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+**** Basic
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     (with-eval-after-load 'ox-latex
       ;; Add packages by default
@@ -823,12 +828,12 @@ https://emacs.stackexchange.com/questions/30575/adding-latex-newpage-before-a-he
     )
 #+END_SRC
 
-*** Beamer
-**** TODO Make a custom environment for columns with title
+**** Beamer
+***** TODO Make a custom environment for columns with title
 #+beamer: \csubtitle{title}\vspace{1em}
 
-**** Custom Environments
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+***** Custom Environments
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     (with-eval-after-load 'ox-beamer
       (add-to-list 'org-beamer-environments-extra
@@ -845,8 +850,8 @@ https://emacs.stackexchange.com/questions/30575/adding-latex-newpage-before-a-he
     )
 #+END_SRC
 
-**** Beamer export options
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+***** Beamer export options
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     (with-eval-after-load 'ox-beamer
       (defun my-beamer-bold (contents backend info)
@@ -858,8 +863,8 @@ https://emacs.stackexchange.com/questions/30575/adding-latex-newpage-before-a-he
     )
 #+END_SRC
 
-*** Latex Fragments
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+**** Latex Fragments
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     (with-eval-after-load 'ox-latex
       ;; Automatic toggle of latex fragments http://slumpy.org/blog/2017-02-01-automatic-latex-preview-in-org-mode/
@@ -916,10 +921,10 @@ https://emacs.stackexchange.com/questions/30575/adding-latex-newpage-before-a-he
       ))
 #+END_SRC
 
-*** TODO Custom Export - Add Page and Label for LaTeX export
+**** TODO Custom Export - Add Page and Label for LaTeX export
 https://emacs.stackexchange.com/questions/156/emacs-function-to-convert-an-arbitrary-org-property-into-an-arbitrary-string-na?rq=1
 
-#+BEGIN_SRC emacs-lisp
+#+BEGIN_SRC emacs-lisp :tangle no
   (with-eval-after-load 'org
     (defcustom tdehaeze/org-property-mapping
       '((latex ("CUSTOM_PAGE" . tdehaeze/insert-org-page-latex)
@@ -934,7 +939,7 @@ https://emacs.stackexchange.com/questions/156/emacs-function-to-convert-an-arbit
     )
 #+END_SRC
 
-#+BEGIN_SRC emacs-lisp
+#+BEGIN_SRC emacs-lisp :tangle no
   (with-eval-after-load 'org
     (defun tdehaeze/replace-org-property (backend)
       "Convert org properties using `tdehaeze/org-property-mapping'.
@@ -956,7 +961,7 @@ https://emacs.stackexchange.com/questions/156/emacs-function-to-convert-an-arbit
     )
 #+END_SRC
 
-#+BEGIN_SRC emacs-lisp
+#+BEGIN_SRC emacs-lisp :tangle no
   (with-eval-after-load 'org
     (defun tdehaeze/insert-org-label-latex (label)
       "Insert \"\\\\label{LABEL}\\n\" after the :PROPERTY: drawer."
@@ -971,7 +976,7 @@ https://emacs.stackexchange.com/questions/156/emacs-function-to-convert-an-arbit
     )
 #+END_SRC
 
-#+BEGIN_SRC emacs-lisp
+#+BEGIN_SRC emacs-lisp :tangle no
   (with-eval-after-load 'org
     (defun org-latex-format-headline-default-function (todo _todo-type priority text tags _info)
       "Default format function for a headline.
@@ -987,22 +992,22 @@ https://emacs.stackexchange.com/questions/156/emacs-function-to-convert-an-arbit
     )
 #+END_SRC
 
-** TODO Org-Bibtex
+*** TODO Org-Bibtex
 It seems it is uncompatble with org-ref (https://github.com/jkitchin/org-ref/issues/101)
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   ;; (require 'ox-bibtex)
   ;; (with-eval-after-load 'org
   ;;   )
 #+END_SRC
 
-** TODO Org-pomodoro
-** Org Ref
+*** TODO Org-pomodoro
+*** Org Ref
 Ressources:
 - https://github.com/tmalsburg/helm-bibtex
 - https://github.com/jkitchin/org-ref
 - https://www.reddit.com/r/emacs/comments/4gudyw/help_me_with_my_orgmode_workflow_for_notetaking/
 
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     ;; Folder where the notes files are located (or file if just one Note file)
     (setq org-ref-notes-directory "~/MEGA/These/Ressources/notes")
@@ -1028,10 +1033,10 @@ Ressources:
     )
 #+END_SRC
 
-** Org Noter
+*** Org Noter
 - https://github.com/weirdNox/org-noter
 
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     ;; Fraction of the frame that the document window will occupy when split
     (setq org-noter-doc-split-fraction '(0.6 . 0.6))
@@ -1044,8 +1049,8 @@ Ressources:
   )
 #+END_SRC
 
-** TODO Custom key bindings
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** TODO Custom key bindings
+#+BEGIN_SRC emacs-lisp
   ;; Export to LaTeX
   (evil-define-key 'normal org-mode-map (kbd ", l") 'org-latex-export-to-latex)
   ;; Open pdf externally with Zathura
@@ -1053,15 +1058,15 @@ Ressources:
   ;; (call-process "zathura" nil 0 nil (nth 0 (-cons-to-list (bibtex-completion-find-pdf key)))))
 #+END_SRC
 
-** Org-Contacts
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Org-Contacts
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     (setq org-contacts-files (list (format "%s/%s" dropbox-base-path "org/contacts.org")))
   )
 #+END_SRC
 
-** Org-Wunderlist
-#+BEGIN_SRC emacs-lisp
+*** Org-Wunderlist
+#+BEGIN_SRC emacs-lisp :tangle no
   (require 'org-wunderlist)
   (setq org-wunderlist-client-id "6799d9caeb2f5d8bd641"
         org-wunderlist-token "fd5965cde436c2587850a7c517d366561d8a1cbf7b6d96ab62f3fc8c9930"
@@ -1069,8 +1074,8 @@ Ressources:
         org-wunderlist-dir "~/.emacs.d/org-wunderlist/")
 #+END_SRC
 
-** More Config
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** More Config
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'org
     ;; Highligh latex parts in org mode
     (setq org-highlight-latex-and-related '(latex))
@@ -1084,31 +1089,23 @@ Ressources:
   )
 #+END_SRC
 
-** NOTE Cheatsheet
-*** View current TODOs of the file
-From the file:
-- run the agenda =,a=
-- restrict to the buffer using =<=
-- run the agenda command like listing all TODOs entries using =t=
-
-* Projectile
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+** Projectile
+#+BEGIN_SRC emacs-lisp
   (setq projectile-generic-command "fd -H --ignore-file .projectile -t f -0")
 #+END_SRC
-
-* TODO [#A] Matlab
+** TODO [#A] Matlab
 - https://github.com/yuhonglin/matlab-mode
 - https://github.com/pronobis/matlab-mode
 
-** Setup Matlab Mode
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Setup Matlab Mode
+#+BEGIN_SRC emacs-lisp
   (setq matlab-shell-command "/usr/local/bin/matlab")
   (setq matlab-shell-command-switches (list "-nodesktop -nosplash"))
   (setq mlint-programs '("mlint" "/usr/local/MATLAB/R2018a/bin/glnxa64/mlint"))
 #+END_SRC
 
-** Setup Flycheck
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Setup Flycheck
+#+BEGIN_SRC emacs-lisp
   (defvar mlint-executable "/usr/local/MATLAB/R2018a/bin/glnxa64/mlint")
 
   (flycheck-define-command-checker 'matlab-mlint
@@ -1124,19 +1121,19 @@ From the file:
   (add-hook 'matlab-mode-hook 'flycheck-mode)
 #+END_SRC
 
-#+BEGIN_SRC emacs-lisp
+#+BEGIN_SRC emacs-lisp :tangle no
 (defadvice org-edit-src-code (around set-buffer-file-name activate compile)
   (let ((file-name (buffer-file-name))) ;; (1)
     ad-do-it                            ;; (2)
     (setq buffer-file-name file-name))) ;; (3)
 #+END_SRC
 
-** Setup Company - not working
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Setup Company - not working
+#+BEGIN_SRC emacs-lisp
   ;; (add-to-list 'company-backends 'company-matlab)
 #+END_SRC
 
-* Mails With Mu4e
+** Mails With Mu4e
 - https://github.com/kzar/davemail
 - http://cachestocaches.com/2017/3/complete-guide-email-emacs-using-mu-and-/
 - http://spacemacs.org/layers/+email/mu4e/README.html
@@ -1146,14 +1143,14 @@ From the file:
 - http://www.brool.com/post/using-mu4e/
 - https://www.reddit.com/r/emacs/comments/8q84dl/tip_how_to_easily_manage_your_emails_with_mu4e/
 
-** Set default mail user agent to mu4e
-   #+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Set default mail user agent to mu4e
+   #+BEGIN_SRC emacs-lisp
      (setq mail-user-agent 'mu4e-user-agent)
    #+END_SRC
 
-** Default config
-*** Default behavior
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Default config
+**** Default behavior
+#+BEGIN_SRC emacs-lisp
   (setq mu4e-maildir "~/.mail"
         mu4e-update-interval nil
         mu4e-compose-signature-auto-include t
@@ -1161,8 +1158,8 @@ From the file:
         mu4e-view-show-addresses t)
 #+END_SRC
 
-*** Default folders
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+**** Default folders
+#+BEGIN_SRC emacs-lisp
   (setq mu4e-sent-folder "/gmail/Sent"
         mu4e-drafts-folder "/gmail/Drafts"
         mu4e-trash-folder "/gmail/Trash"
@@ -1171,24 +1168,24 @@ From the file:
         user-mail-address "dehaeze.thomas@gmail.com")
 #+END_SRC
 
-*** Default signature and email address
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+**** Default signature and email address
+#+BEGIN_SRC emacs-lisp
   (setq mu4e-compose-signature "Thomas Dehaeze\n"
         user-mail-address "dehaeze.thomas@gmail.com")
 #+END_SRC
 
-*** Saving the attachment to Downloads directory
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+**** Saving the attachment to Downloads directory
+#+BEGIN_SRC emacs-lisp
   (setq mu4e-attachment-dir "~/Downloads")
 #+END_SRC
 
-*** A list of user's e-mail addresses
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+**** A list of user's e-mail addresses
+#+BEGIN_SRC emacs-lisp
   (setq mu4e-user-mail-address-list '("dehaeze.thomas@gmail.com" "thomas.dehaeze@esrf.fr" "thomas.dehaeze@doct.ulg.ac.be"))
 #+END_SRC
 
-*** Mail directory shortcuts
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+**** Mail directory shortcuts
+#+BEGIN_SRC emacs-lisp
   (setq mu4e-maildir-shortcuts
         '(
           ("/gmail/Inbox" . ?g)
@@ -1197,8 +1194,8 @@ From the file:
           ))
 #+END_SRC
 
-** Contexts - Email accounts
-#+BEGIN_SRC emacs-lisp
+*** Contexts - Email accounts
+#+BEGIN_SRC emacs-lisp :tangle no
   (setq mu4e-contexts
         `( ,(make-mu4e-context
              :name "gmail"
@@ -1259,8 +1256,8 @@ From the file:
   (setq mu4e-context-policy 'pick-first)
 #+END_SRC
 
-** Receiving emails - Mbsync
-#+BEGIN_SRC emacs-lisp
+*** Receiving emails - Mbsync
+#+BEGIN_SRC emacs-lisp :tangle no
   (setq mu4e-get-mail-command "mbsync -a"
         smtpmail-default-smtp-server "smtp.gmail.com"
         smtpmail-smtp-server "smtp.gmail.com"
@@ -1268,17 +1265,17 @@ From the file:
 #+END_SRC
 
 Let systemd get the mail, then pressing =U= will just run =mu= to reindex everything.
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   (setq mu4e-get-mail-command "true")
 #+end_src
 
 Fix for mbsync found [[http://pragmaticemacs.com/emacs/fixing-duplicate-uid-errors-when-using-mbsync-and-mu4e/][here]].
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   (setq mu4e-change-filenames-when-moving t)
 #+end_src
 
-** Sending emails - Msmtp
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Sending emails - Msmtp
+#+BEGIN_SRC emacs-lisp
   (setq smtpmail-default-smtp-server "smtp.gmail.com"
         smtpmail-smtp-server "smtp.gmail.com"
         smtpmail-smtp-service 587)
@@ -1288,8 +1285,8 @@ Fix for mbsync found [[http://pragmaticemacs.com/emacs/fixing-duplicate-uid-erro
         user-full-name "Thomas Dehaeze")
 #+END_SRC
 
-** Bookmarks
-#+BEGIN_SRC emacs-lisp
+*** Bookmarks
+#+BEGIN_SRC emacs-lisp :tangle no
   (setq mu4e-bookmarks
         `(("flag:unread AND NOT flag:trashed" "Unread messages" ?u)
           ("date:today..now" "Today's messages" ?t)
@@ -1303,25 +1300,25 @@ Fix for mbsync found [[http://pragmaticemacs.com/emacs/fixing-duplicate-uid-erro
            "All inboxes" ?i)))
 #+END_SRC
 
-** Notifications
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Notifications
+#+BEGIN_SRC emacs-lisp
   (with-eval-after-load 'mu4e-alert
     (mu4e-alert-set-default-style 'libnotify))
   (mu4e-alert-enable-notifications)
 #+END_SRC
 
-** TODO Mode-line notifications
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+**** TODO Mode-line notifications
+#+BEGIN_SRC emacs-lisp
   (setq mu4e-enable-mode-line t)
 #+END_SRC
 
-** TODO [#A] When putting something on the Trash, it will be in the archive folder on gmail
+*** TODO [#A] When putting something on the Trash, it will be in the archive folder on gmail
 Even when totally deleting it. It will stage on gmail. How to fix that?
 
-** TODO Verify that sending mails with gmail account works and that there is no duplicate
+*** TODO Verify that sending mails with gmail account works and that there is no duplicate
    SCHEDULED: <2019-01-17 jeu.>
 Should check this variable: mu4e-sent-messages-behavior
-#+BEGIN_SRC emacs-lisp
+#+BEGIN_SRC emacs-lisp :tangle no
   (setq mu4e-sent-messages-behavior 'delete)
 #+END_SRC
 And [[https://www.djcbsoftware.nl/code/mu/mu4e/Gmail-configuration.html][here]].
@@ -1330,7 +1327,7 @@ If I put it to delete, it works for gmail but not for the other ones...
 
 Check [[https://github.com/djcb/mu/issues/179][here]].
 
-** TODO Cheatsheet
+*** TODO Cheatsheet
 | Command | Usage                 |
 |---------+-----------------------|
 | =C-j=   | Next mail             |
@@ -1339,22 +1336,22 @@ Check [[https://github.com/djcb/mu/issues/179][here]].
 | =t=     | Move to Archive       |
 | =d=     | Move to Trash         |
 
-*** TODO Add keybindings to refresh mu
+**** TODO Add keybindings to refresh mu
 
-*** TODO Send email using org-mode
+**** TODO Send email using org-mode
 
-*** Store emails into org-mode
+**** Store emails into org-mode
 Use =mu4e-org-store-and-capture= when on an email to store it using a capture template.
 Org simply =C-c l= to store the link to the email and then =C-c C-l= and paste the link.
 
-* PDF-Tools
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+** PDF-Tools
+#+BEGIN_SRC emacs-lisp
   (add-hook 'pdf-view-mode-hook (lambda() (linum-mode -1)))
 #+END_SRC
 
-* Custom command and leader keys
-** Watch LaTeX file using latexmk
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+** Custom command and leader keys
+*** Watch LaTeX file using latexmk
+#+BEGIN_SRC emacs-lisp
   (defun latex/watch ()
     "Watch LaTeX file using latexmk"
     (interactive)
@@ -1372,32 +1369,31 @@ Org simply =C-c l= to store the link to the email and then =C-c C-l= and paste t
   (spacemacs/set-leader-keys "ok" 'latex/watch/kill)
 #+END_SRC
 
-** Helm-Bibtex
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Helm-Bibtex
+#+BEGIN_SRC emacs-lisp
   (spacemacs/set-leader-keys "ob" 'helm-bibtex)
   (spacemacs/set-leader-keys "of" 'helm-bibtex-favorites)
   (spacemacs/set-leader-keys "or" 'helm-resume)
 #+END_SRC
 
-** Eshell
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+*** Eshell
+#+BEGIN_SRC emacs-lisp
   (spacemacs/set-leader-keys "os" 'eshell)
 #+END_SRC
 
-* Other Config
 ** Disable automatic highlight of TODO keywords in orgmode buffers
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   (add-hook 'org-mode-hook (lambda () (hl-todo-mode -1)))
 #+END_SRC
 
 ** Path for Shell
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   (when (memq window-system '(mac ns x))
     (exec-path-from-shell-initialize))
 #+END_SRC
 
 ** Proxy
-#+BEGIN_SRC emacs-lisp
+#+BEGIN_SRC emacs-lisp :tangle no
   (setq url-proxy-services
      '(("http" . "proxy.esrf.fr:3128")
        ("https" . "proxy.esrf.fr:3128")
@@ -1405,6 +1401,6 @@ Org simply =C-c l= to store the link to the email and then =C-c C-l= and paste t
 #+END_SRC
 
 ** Remove the problem of recentf files
-#+BEGIN_SRC emacs-lisp :tangle ~/.spacemacs.d/user-config.el
+#+BEGIN_SRC emacs-lisp
   (cancel-timer recentf-auto-save-timer)
 #+END_SRC